Hb_000638_070

Information

Type -
Description -
Location Contig638: 56125-61911
Sequence    

Annotation

kegg
ID pop:POPTR_0007s04320g
description POPTRDRAFT_217187; hypothetical protein
nr
ID XP_012081922.1
description PREDICTED: protein trichome birefringence-like 14 [Jatropha curcas]
swissprot
ID F4K5L5
description Protein trichome birefringence-like 16 OS=Arabidopsis thaliana GN=TBL16 PE=2 SV=1
trembl
ID B9HEX4
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s04320g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52003: 56174-62059 , PASA_asmbl_52004: 59697-59851 , PASA_asmbl_52005: 60066-60397
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000638_070 0.0 - - PREDICTED: protein trichome birefringence-like 14 [Jatropha curcas]
2 Hb_000665_180 0.0787904557 - - PREDICTED: ER membrane protein complex subunit 7 homolog isoform X2 [Jatropha curcas]
3 Hb_011486_060 0.0905021516 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001976_030 0.0921320035 - - PREDICTED: protein NETWORKED 2D-like isoform X2 [Jatropha curcas]
5 Hb_001663_040 0.0924346151 - - hypothetical protein B456_007G162000 [Gossypium raimondii]
6 Hb_000395_110 0.093348949 - - PREDICTED: molybdate-anion transporter [Jatropha curcas]
7 Hb_000417_390 0.0944529758 - - PREDICTED: ER lumen protein-retaining receptor A [Jatropha curcas]
8 Hb_000585_110 0.0999821274 - - PREDICTED: probable protein phosphatase 2C 66 [Jatropha curcas]
9 Hb_002955_020 0.1000780972 - - PREDICTED: calcium uniporter protein 6, mitochondrial-like [Jatropha curcas]
10 Hb_001051_050 0.1000932806 - - conserved hypothetical protein [Ricinus communis]
11 Hb_185830_060 0.1003828759 - - PREDICTED: ras-related protein RABB1c [Fragaria vesca subsp. vesca]
12 Hb_000796_150 0.1006371126 - - PREDICTED: uncharacterized protein LOC105136996 isoform X1 [Populus euphratica]
13 Hb_000057_110 0.1009190327 - - PREDICTED: kinesin-13A [Jatropha curcas]
14 Hb_000390_050 0.1018171191 - - PREDICTED: GPCR-type G protein 1 [Jatropha curcas]
15 Hb_011606_020 0.1019794978 - - hypothetical protein CISIN_1g023687mg [Citrus sinensis]
16 Hb_000007_090 0.1027200615 - - PREDICTED: LAG1 longevity assurance homolog 3 [Jatropha curcas]
17 Hb_002193_060 0.1034374689 - - PREDICTED: uncharacterized protein C4orf29 homolog [Pyrus x bretschneideri]
18 Hb_003994_030 0.1035910338 - - PREDICTED: organic cation/carnitine transporter 7 [Jatropha curcas]
19 Hb_006829_060 0.1035972575 - - PREDICTED: microtubule-associated protein TORTIFOLIA1 isoform X1 [Jatropha curcas]
20 Hb_000920_310 0.1044618571 - - Ran GTPase binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000638_070 Hb_000638_070 Hb_000665_180 Hb_000665_180 Hb_000638_070--Hb_000665_180 Hb_011486_060 Hb_011486_060 Hb_000638_070--Hb_011486_060 Hb_001976_030 Hb_001976_030 Hb_000638_070--Hb_001976_030 Hb_001663_040 Hb_001663_040 Hb_000638_070--Hb_001663_040 Hb_000395_110 Hb_000395_110 Hb_000638_070--Hb_000395_110 Hb_000417_390 Hb_000417_390 Hb_000638_070--Hb_000417_390 Hb_000008_340 Hb_000008_340 Hb_000665_180--Hb_000008_340 Hb_000665_180--Hb_000395_110 Hb_185830_060 Hb_185830_060 Hb_000665_180--Hb_185830_060 Hb_002955_020 Hb_002955_020 Hb_000665_180--Hb_002955_020 Hb_002193_060 Hb_002193_060 Hb_000665_180--Hb_002193_060 Hb_003058_100 Hb_003058_100 Hb_011486_060--Hb_003058_100 Hb_002740_080 Hb_002740_080 Hb_011486_060--Hb_002740_080 Hb_000012_080 Hb_000012_080 Hb_011486_060--Hb_000012_080 Hb_000057_110 Hb_000057_110 Hb_011486_060--Hb_000057_110 Hb_000389_030 Hb_000389_030 Hb_011486_060--Hb_000389_030 Hb_000049_180 Hb_000049_180 Hb_001976_030--Hb_000049_180 Hb_001628_120 Hb_001628_120 Hb_001976_030--Hb_001628_120 Hb_042083_040 Hb_042083_040 Hb_001976_030--Hb_042083_040 Hb_006829_060 Hb_006829_060 Hb_001976_030--Hb_006829_060 Hb_005563_010 Hb_005563_010 Hb_001976_030--Hb_005563_010 Hb_003875_030 Hb_003875_030 Hb_001663_040--Hb_003875_030 Hb_000181_350 Hb_000181_350 Hb_001663_040--Hb_000181_350 Hb_002392_010 Hb_002392_010 Hb_001663_040--Hb_002392_010 Hb_012573_050 Hb_012573_050 Hb_001663_040--Hb_012573_050 Hb_000116_130 Hb_000116_130 Hb_001663_040--Hb_000116_130 Hb_000260_510 Hb_000260_510 Hb_000395_110--Hb_000260_510 Hb_010672_020 Hb_010672_020 Hb_000395_110--Hb_010672_020 Hb_000395_110--Hb_185830_060 Hb_000979_130 Hb_000979_130 Hb_000395_110--Hb_000979_130 Hb_000395_110--Hb_002193_060 Hb_000390_050 Hb_000390_050 Hb_000417_390--Hb_000390_050 Hb_000585_110 Hb_000585_110 Hb_000417_390--Hb_000585_110 Hb_001080_300 Hb_001080_300 Hb_000417_390--Hb_001080_300 Hb_001029_040 Hb_001029_040 Hb_000417_390--Hb_001029_040 Hb_015884_020 Hb_015884_020 Hb_000417_390--Hb_015884_020 Hb_074197_040 Hb_074197_040 Hb_000417_390--Hb_074197_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.66133 5.65158 19.8359 33.371 7.09653 7.6495
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.52601 12.0173 10.1271 10.7981 27.7439

CAGE analysis