Hb_000638_090

Information

Type -
Description -
Location Contig638: 81868-83840
Sequence    

Annotation

kegg
ID pop:POPTR_0007s04270g
description POPTRDRAFT_217182; hypothetical protein
nr
ID AIU41646.1
description ABC transporter family protein [Hevea brasiliensis]
swissprot
ID Q9SIT6
description ABC transporter G family member 5 OS=Arabidopsis thaliana GN=ABCG5 PE=2 SV=1
trembl
ID A0A097P9S7
description ABC transporter family protein OS=Hevea brasiliensis GN=ABCG5 PE=2 SV=1
Gene Ontology
ID GO:0016021
description abc transporter g family member 5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52012: 81696-83943
cDNA
(Sanger)
(ID:Location)		 020_B15.ab1: 82997-83823 , 038_A06.ab1: 82976-83823 , 039_F24.ab1: 83069-83823

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000638_090 0.0 - - ABC transporter family protein [Hevea brasiliensis]
2 Hb_009823_010 0.1196264339 - - PREDICTED: uncharacterized protein LOC105633096 [Jatropha curcas]
3 Hb_001408_050 0.1272561521 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001248_030 0.1371735117 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
5 Hb_003576_050 0.1423879079 transcription factor TF Family: EIL ETHYLENE-INSENSITIVE3 protein, putative [Ricinus communis]
6 Hb_004218_160 0.1473177434 - - NBS-LRR type disease resistance protein [Medicago truncatula]
7 Hb_117168_010 0.1478060451 - - PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
8 Hb_002660_040 0.1483952103 - - PREDICTED: CASP-like protein 5A1 isoform X1 [Jatropha curcas]
9 Hb_000077_330 0.153719192 - - PREDICTED: bifunctional epoxide hydrolase 2-like [Jatropha curcas]
10 Hb_002030_170 0.1542153744 - - PREDICTED: calcium-transporting ATPase 1-like [Jatropha curcas]
11 Hb_003453_030 0.1558402433 - - hypothetical protein JCGZ_26893 [Jatropha curcas]
12 Hb_001514_210 0.1592779169 - - hypothetical protein VITISV_012133 [Vitis vinifera]
13 Hb_005880_010 0.1603475063 - - PREDICTED: uncharacterized protein LOC105646431 [Jatropha curcas]
14 Hb_002662_090 0.1611660506 - - PREDICTED: probable inactive receptor kinase At5g67200 [Jatropha curcas]
15 Hb_000778_020 0.1617529366 - - PREDICTED: salicylic acid-binding protein 2-like [Jatropha curcas]
16 Hb_000976_440 0.1618168523 - - UDP-glucosyltransferase, putative [Ricinus communis]
17 Hb_000085_230 0.1641080305 - - PREDICTED: probable long-chain-alcohol O-fatty-acyltransferase 5 [Jatropha curcas]
18 Hb_000181_160 0.1643080861 - - PREDICTED: uncharacterized protein LOC105637575 isoform X2 [Jatropha curcas]
19 Hb_000657_030 0.1646436061 transcription factor TF Family: bZIP Ocs element-binding factor, putative [Ricinus communis]
20 Hb_007919_040 0.1671843636 - - PREDICTED: protein LYK5 [Jatropha curcas]

Gene co-expression network

sample Hb_000638_090 Hb_000638_090 Hb_009823_010 Hb_009823_010 Hb_000638_090--Hb_009823_010 Hb_001408_050 Hb_001408_050 Hb_000638_090--Hb_001408_050 Hb_001248_030 Hb_001248_030 Hb_000638_090--Hb_001248_030 Hb_003576_050 Hb_003576_050 Hb_000638_090--Hb_003576_050 Hb_004218_160 Hb_004218_160 Hb_000638_090--Hb_004218_160 Hb_117168_010 Hb_117168_010 Hb_000638_090--Hb_117168_010 Hb_000976_440 Hb_000976_440 Hb_009823_010--Hb_000976_440 Hb_009823_010--Hb_003576_050 Hb_009823_010--Hb_001408_050 Hb_000181_160 Hb_000181_160 Hb_009823_010--Hb_000181_160 Hb_000098_310 Hb_000098_310 Hb_009823_010--Hb_000098_310 Hb_003453_030 Hb_003453_030 Hb_001408_050--Hb_003453_030 Hb_001408_050--Hb_000181_160 Hb_001678_030 Hb_001678_030 Hb_001408_050--Hb_001678_030 Hb_001408_050--Hb_003576_050 Hb_007416_150 Hb_007416_150 Hb_001248_030--Hb_007416_150 Hb_001248_030--Hb_009823_010 Hb_001248_030--Hb_003576_050 Hb_001248_030--Hb_001408_050 Hb_002304_140 Hb_002304_140 Hb_001248_030--Hb_002304_140 Hb_003517_020 Hb_003517_020 Hb_003576_050--Hb_003517_020 Hb_000313_370 Hb_000313_370 Hb_003576_050--Hb_000313_370 Hb_000928_040 Hb_000928_040 Hb_003576_050--Hb_000928_040 Hb_000085_230 Hb_000085_230 Hb_004218_160--Hb_000085_230 Hb_002660_040 Hb_002660_040 Hb_004218_160--Hb_002660_040 Hb_004007_120 Hb_004007_120 Hb_004218_160--Hb_004007_120 Hb_000527_140 Hb_000527_140 Hb_004218_160--Hb_000527_140 Hb_000120_070 Hb_000120_070 Hb_004218_160--Hb_000120_070 Hb_000977_090 Hb_000977_090 Hb_004218_160--Hb_000977_090 Hb_002551_090 Hb_002551_090 Hb_117168_010--Hb_002551_090 Hb_001373_010 Hb_001373_010 Hb_117168_010--Hb_001373_010 Hb_117168_010--Hb_003576_050 Hb_001091_020 Hb_001091_020 Hb_117168_010--Hb_001091_020 Hb_000086_370 Hb_000086_370 Hb_117168_010--Hb_000086_370 Hb_006241_010 Hb_006241_010 Hb_117168_010--Hb_006241_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.43564 92.7716 23.3242 39.6349 3.55114 9.46497
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.0044 0.547913 1.73049 139.326 22.2928

CAGE analysis