Hb_000638_120

Information

Type -
Description -
Location Contig638: 110235-114663
Sequence    

Annotation

kegg
ID rcu:RCOM_1187670
description 2-oxoisovalerate dehydrogenase, putative (EC:1.2.4.4)
nr
ID XP_012070588.1
description PREDICTED: 2-oxoisovalerate dehydrogenase subunit alpha 2, mitochondrial-like [Jatropha curcas]
swissprot
ID Q84JL2
description 2-oxoisovalerate dehydrogenase subunit alpha 2, mitochondrial OS=Arabidopsis thaliana GN=At5g09300 PE=1 SV=1
trembl
ID A0A067KTC8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03684 PE=4 SV=1
Gene Ontology
ID GO:0003863
description 2-oxoisovalerate dehydrogenase subunit alpha mitochondrial-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52015: 110422-114678
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000638_120 0.0 - - PREDICTED: 2-oxoisovalerate dehydrogenase subunit alpha 2, mitochondrial-like [Jatropha curcas]
2 Hb_001289_080 0.0640078106 - - PREDICTED: protein YLS9-like [Jatropha curcas]
3 Hb_007632_240 0.0655682597 - - transporter, putative [Ricinus communis]
4 Hb_003438_050 0.0671269331 - - PREDICTED: rab3 GTPase-activating protein catalytic subunit isoform X2 [Jatropha curcas]
5 Hb_003025_110 0.0672555462 - - PREDICTED: serine/threonine-protein kinase HT1 isoform X1 [Jatropha curcas]
6 Hb_004689_050 0.0694986714 - - conserved hypothetical protein [Ricinus communis]
7 Hb_009467_060 0.0792492004 - - PREDICTED: chromo domain-containing protein LHP1 isoform X1 [Jatropha curcas]
8 Hb_001946_010 0.0806789869 - - CBL-interacting serine/threonine-protein kinase, putative [Ricinus communis]
9 Hb_002728_070 0.0822307496 - - PREDICTED: quinone oxidoreductase-like protein 2 homolog [Jatropha curcas]
10 Hb_004410_030 0.0845791825 - - PREDICTED: protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, chloroplastic isoform X1 [Jatropha curcas]
11 Hb_011930_160 0.0854709276 - - PREDICTED: tetratricopeptide repeat protein 38-like [Jatropha curcas]
12 Hb_001141_020 0.0875965582 - - PREDICTED: stress-induced-phosphoprotein 1 [Jatropha curcas]
13 Hb_023480_010 0.0879590383 - - cellular nucleic acid binding protein, putative [Ricinus communis]
14 Hb_027472_150 0.0885307989 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 10 [Jatropha curcas]
15 Hb_000205_100 0.0886070618 - - PREDICTED: exportin-4 [Jatropha curcas]
16 Hb_003847_130 0.0911704115 - - cytochrome C oxidase assembly protein cox11, putative [Ricinus communis]
17 Hb_007575_050 0.0913563631 transcription factor TF Family: BBR-BPC PREDICTED: protein BASIC PENTACYSTEINE6 [Jatropha curcas]
18 Hb_021596_030 0.0914989869 - - PREDICTED: uncharacterized protein LOC105631841 isoform X1 [Jatropha curcas]
19 Hb_000922_410 0.0918061491 - - PREDICTED: anthranilate phosphoribosyltransferase, chloroplastic [Jatropha curcas]
20 Hb_063716_100 0.0922908729 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 56-like isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000638_120 Hb_000638_120 Hb_001289_080 Hb_001289_080 Hb_000638_120--Hb_001289_080 Hb_007632_240 Hb_007632_240 Hb_000638_120--Hb_007632_240 Hb_003438_050 Hb_003438_050 Hb_000638_120--Hb_003438_050 Hb_003025_110 Hb_003025_110 Hb_000638_120--Hb_003025_110 Hb_004689_050 Hb_004689_050 Hb_000638_120--Hb_004689_050 Hb_009467_060 Hb_009467_060 Hb_000638_120--Hb_009467_060 Hb_004410_030 Hb_004410_030 Hb_001289_080--Hb_004410_030 Hb_001289_080--Hb_004689_050 Hb_001936_060 Hb_001936_060 Hb_001289_080--Hb_001936_060 Hb_001289_080--Hb_003025_110 Hb_000029_130 Hb_000029_130 Hb_001289_080--Hb_000029_130 Hb_003847_130 Hb_003847_130 Hb_007632_240--Hb_003847_130 Hb_007632_240--Hb_003438_050 Hb_007632_240--Hb_003025_110 Hb_003375_070 Hb_003375_070 Hb_007632_240--Hb_003375_070 Hb_007632_240--Hb_004410_030 Hb_003438_050--Hb_003025_110 Hb_001040_100 Hb_001040_100 Hb_003438_050--Hb_001040_100 Hb_023480_010 Hb_023480_010 Hb_003438_050--Hb_023480_010 Hb_003010_020 Hb_003010_020 Hb_003438_050--Hb_003010_020 Hb_003025_110--Hb_004410_030 Hb_000011_200 Hb_000011_200 Hb_003025_110--Hb_000011_200 Hb_001946_010 Hb_001946_010 Hb_003025_110--Hb_001946_010 Hb_007575_050 Hb_007575_050 Hb_003025_110--Hb_007575_050 Hb_011930_160 Hb_011930_160 Hb_003025_110--Hb_011930_160 Hb_000617_180 Hb_000617_180 Hb_003025_110--Hb_000617_180 Hb_004429_100 Hb_004429_100 Hb_004689_050--Hb_004429_100 Hb_033834_060 Hb_033834_060 Hb_004689_050--Hb_033834_060 Hb_004689_050--Hb_001946_010 Hb_000205_100 Hb_000205_100 Hb_004689_050--Hb_000205_100 Hb_100215_010 Hb_100215_010 Hb_004689_050--Hb_100215_010 Hb_001141_020 Hb_001141_020 Hb_009467_060--Hb_001141_020 Hb_009467_060--Hb_003025_110 Hb_001199_020 Hb_001199_020 Hb_009467_060--Hb_001199_020 Hb_002271_030 Hb_002271_030 Hb_009467_060--Hb_002271_030 Hb_000025_110 Hb_000025_110 Hb_009467_060--Hb_000025_110 Hb_001006_140 Hb_001006_140 Hb_009467_060--Hb_001006_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.1871 10.8489 10.5032 11.3184 16.3556 21.9533
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
22.7526 11.6802 10.4642 19.3098 16.4176

CAGE analysis