Hb_000638_150

Information

Type -
Description -
Location Contig638: 131950-133876
Sequence    

Annotation

kegg
ID pop:POPTR_0007s04220g
description hypothetical protein
nr
ID XP_012076112.1
description PREDICTED: U-box domain-containing protein 26-like [Jatropha curcas]
swissprot
ID Q9LT79
description U-box domain-containing protein 25 OS=Arabidopsis thaliana GN=PUB25 PE=2 SV=1
trembl
ID A0A067KHF0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12798 PE=4 SV=1
Gene Ontology
ID GO:0004842
description u-box domain-containing protein 26-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52017: 131379-131558 , PASA_asmbl_52018: 132095-132503 , PASA_asmbl_52021: 133009-133186
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000638_150 0.0 - - PREDICTED: U-box domain-containing protein 26-like [Jatropha curcas]
2 Hb_001122_010 0.1609991935 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
3 Hb_000256_120 0.1704295249 - - PREDICTED: probable receptor-like protein kinase At1g80640 [Jatropha curcas]
4 Hb_000661_280 0.1816595692 - - PREDICTED: protein TRAUCO [Jatropha curcas]
5 Hb_001277_040 0.1942503824 - - PREDICTED: uncharacterized protein LOC105632066 [Jatropha curcas]
6 Hb_010270_010 0.2000803866 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
7 Hb_009710_020 0.2164793614 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein At5g63020 [Jatropha curcas]
8 Hb_002781_010 0.2198954695 transcription factor TF Family: LUG PREDICTED: transcriptional corepressor LEUNIG-like isoform X1 [Jatropha curcas]
9 Hb_004611_030 0.2294254883 - - structural maintenance of chromosomes 5 smc5, putative [Ricinus communis]
10 Hb_001622_010 0.2300216421 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
11 Hb_002863_100 0.2384503537 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein At5g63020 [Jatropha curcas]
12 Hb_005464_030 0.2395979411 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
13 Hb_000840_070 0.2418325949 desease resistance Gene Name: NB-ARC leucine-rich repeat-containing protein, putative [Ricinus communis]
14 Hb_039342_010 0.242019711 - - pyruvate decarboxylase [Hevea brasiliensis]
15 Hb_000181_290 0.2426948152 - - hypothetical protein POPTR_0001s41000g [Populus trichocarpa]
16 Hb_007982_050 0.2435132057 - - PREDICTED: somatic embryogenesis receptor kinase 2-like [Jatropha curcas]
17 Hb_005000_140 0.2462500914 - - PREDICTED: uncharacterized protein LOC105637876 isoform X1 [Jatropha curcas]
18 Hb_001195_350 0.2466178572 - - hypothetical protein JCGZ_04423 [Jatropha curcas]
19 Hb_000453_150 0.2467156618 - - CBL-interacting serine/threonine-protein kinase, putative [Ricinus communis]
20 Hb_001711_010 0.2468638347 - - -

Gene co-expression network

sample Hb_000638_150 Hb_000638_150 Hb_001122_010 Hb_001122_010 Hb_000638_150--Hb_001122_010 Hb_000256_120 Hb_000256_120 Hb_000638_150--Hb_000256_120 Hb_000661_280 Hb_000661_280 Hb_000638_150--Hb_000661_280 Hb_001277_040 Hb_001277_040 Hb_000638_150--Hb_001277_040 Hb_010270_010 Hb_010270_010 Hb_000638_150--Hb_010270_010 Hb_009710_020 Hb_009710_020 Hb_000638_150--Hb_009710_020 Hb_001122_010--Hb_010270_010 Hb_002781_010 Hb_002781_010 Hb_001122_010--Hb_002781_010 Hb_009913_010 Hb_009913_010 Hb_001122_010--Hb_009913_010 Hb_001122_010--Hb_000256_120 Hb_039342_010 Hb_039342_010 Hb_001122_010--Hb_039342_010 Hb_000256_120--Hb_010270_010 Hb_000256_120--Hb_009710_020 Hb_000256_120--Hb_002781_010 Hb_000242_030 Hb_000242_030 Hb_000256_120--Hb_000242_030 Hb_000661_280--Hb_001277_040 Hb_008112_010 Hb_008112_010 Hb_000661_280--Hb_008112_010 Hb_011689_100 Hb_011689_100 Hb_000661_280--Hb_011689_100 Hb_000840_070 Hb_000840_070 Hb_000661_280--Hb_000840_070 Hb_004667_040 Hb_004667_040 Hb_000661_280--Hb_004667_040 Hb_003226_110 Hb_003226_110 Hb_001277_040--Hb_003226_110 Hb_001195_350 Hb_001195_350 Hb_001277_040--Hb_001195_350 Hb_000950_040 Hb_000950_040 Hb_001277_040--Hb_000950_040 Hb_005649_090 Hb_005649_090 Hb_001277_040--Hb_005649_090 Hb_000270_110 Hb_000270_110 Hb_001277_040--Hb_000270_110 Hb_010270_010--Hb_039342_010 Hb_010270_010--Hb_002781_010 Hb_001675_010 Hb_001675_010 Hb_010270_010--Hb_001675_010 Hb_001799_190 Hb_001799_190 Hb_010270_010--Hb_001799_190 Hb_011716_110 Hb_011716_110 Hb_010270_010--Hb_011716_110 Hb_002863_100 Hb_002863_100 Hb_009710_020--Hb_002863_100 Hb_025964_040 Hb_025964_040 Hb_009710_020--Hb_025964_040 Hb_012539_030 Hb_012539_030 Hb_009710_020--Hb_012539_030 Hb_001622_010 Hb_001622_010 Hb_009710_020--Hb_001622_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.13309 6.70921 4.85443 4.15037 0.306122 1.37079
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.603832 0.31669 0.939755 4.27011 0.385437

CAGE analysis