Hb_000638_180

Information

Type -
Description -
Location Contig638: 146326-147309
Sequence    

Annotation

kegg
ID pop:POPTR_0007s04191g
description POPTRDRAFT_562471; hypothetical protein
nr
ID XP_011023091.1
description PREDICTED: uncharacterized protein LOC105124685 [Populus euphratica]
swissprot
ID -
description -
trembl
ID B9HES4
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s04191g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000638_180 0.0 - - PREDICTED: uncharacterized protein LOC105124685 [Populus euphratica]
2 Hb_000732_100 0.1179870787 - - PREDICTED: uncharacterized protein LOC105649440 [Jatropha curcas]
3 Hb_114733_010 0.1223392281 - - PREDICTED: anthocyanidin 5,3-O-glucosyltransferase-like [Jatropha curcas]
4 Hb_007292_050 0.1238518459 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance RPP13-like protein 4 [Jatropha curcas]
5 Hb_004241_200 0.1268741418 - - hypothetical protein JCGZ_00744 [Jatropha curcas]
6 Hb_097634_010 0.1269162436 - - PREDICTED: UDP-glucuronate 4-epimerase 1 [Jatropha curcas]
7 Hb_000742_260 0.1297891663 - - hypothetical protein RCOM_1336320 [Ricinus communis]
8 Hb_010174_200 0.1302437546 - - PREDICTED: uncharacterized protein LOC105644743 isoform X1 [Jatropha curcas]
9 Hb_000983_110 0.1365013323 - - PREDICTED: omega-hydroxypalmitate O-feruloyl transferase [Jatropha curcas]
10 Hb_000497_170 0.1369593378 - - PREDICTED: uncharacterized protein LOC105647275 [Jatropha curcas]
11 Hb_000692_230 0.1381611381 - - phospholipase d delta, putative [Ricinus communis]
12 Hb_009476_160 0.138331714 - - RING-H2 finger protein ATL2N, putative [Ricinus communis]
13 Hb_001195_650 0.1405400546 - - PREDICTED: calcium uniporter protein 4, mitochondrial [Jatropha curcas]
14 Hb_001999_200 0.1418882398 transcription factor TF Family: C2H2 conserved hypothetical protein [Ricinus communis]
15 Hb_001269_530 0.1443014242 - - ATP-binding cassette transporter, putative [Ricinus communis]
16 Hb_008406_030 0.1443646924 transcription factor TF Family: ERF AP2/ERF super family protein [Hevea brasiliensis]
17 Hb_000537_090 0.144445692 - - conserved hypothetical protein [Ricinus communis]
18 Hb_005618_010 0.1449920647 transcription factor TF Family: MYB hypothetical protein POPTR_0014s10680g [Populus trichocarpa]
19 Hb_000479_060 0.1452404136 - - PREDICTED: UDP-glucose 6-dehydrogenase 1 [Vitis vinifera]
20 Hb_002066_010 0.1456886235 - - PREDICTED: acetylglutamate kinase, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_000638_180 Hb_000638_180 Hb_000732_100 Hb_000732_100 Hb_000638_180--Hb_000732_100 Hb_114733_010 Hb_114733_010 Hb_000638_180--Hb_114733_010 Hb_007292_050 Hb_007292_050 Hb_000638_180--Hb_007292_050 Hb_004241_200 Hb_004241_200 Hb_000638_180--Hb_004241_200 Hb_097634_010 Hb_097634_010 Hb_000638_180--Hb_097634_010 Hb_000742_260 Hb_000742_260 Hb_000638_180--Hb_000742_260 Hb_000537_090 Hb_000537_090 Hb_000732_100--Hb_000537_090 Hb_001318_230 Hb_001318_230 Hb_000732_100--Hb_001318_230 Hb_000732_100--Hb_114733_010 Hb_001269_530 Hb_001269_530 Hb_000732_100--Hb_001269_530 Hb_000090_020 Hb_000090_020 Hb_000732_100--Hb_000090_020 Hb_173107_020 Hb_173107_020 Hb_000732_100--Hb_173107_020 Hb_000384_020 Hb_000384_020 Hb_114733_010--Hb_000384_020 Hb_114733_010--Hb_173107_020 Hb_000816_150 Hb_000816_150 Hb_114733_010--Hb_000816_150 Hb_017700_030 Hb_017700_030 Hb_114733_010--Hb_017700_030 Hb_000991_080 Hb_000991_080 Hb_114733_010--Hb_000991_080 Hb_007292_050--Hb_114733_010 Hb_005618_010 Hb_005618_010 Hb_007292_050--Hb_005618_010 Hb_000172_070 Hb_000172_070 Hb_007292_050--Hb_000172_070 Hb_007292_050--Hb_173107_020 Hb_010174_200 Hb_010174_200 Hb_007292_050--Hb_010174_200 Hb_002250_140 Hb_002250_140 Hb_007292_050--Hb_002250_140 Hb_008406_030 Hb_008406_030 Hb_004241_200--Hb_008406_030 Hb_003209_040 Hb_003209_040 Hb_004241_200--Hb_003209_040 Hb_001195_650 Hb_001195_650 Hb_004241_200--Hb_001195_650 Hb_003209_090 Hb_003209_090 Hb_004241_200--Hb_003209_090 Hb_000983_110 Hb_000983_110 Hb_004241_200--Hb_000983_110 Hb_000892_030 Hb_000892_030 Hb_097634_010--Hb_000892_030 Hb_010417_110 Hb_010417_110 Hb_097634_010--Hb_010417_110 Hb_097634_010--Hb_010174_200 Hb_000567_110 Hb_000567_110 Hb_097634_010--Hb_000567_110 Hb_004109_110 Hb_004109_110 Hb_097634_010--Hb_004109_110 Hb_013691_060 Hb_013691_060 Hb_000742_260--Hb_013691_060 Hb_000365_190 Hb_000365_190 Hb_000742_260--Hb_000365_190 Hb_004143_050 Hb_004143_050 Hb_000742_260--Hb_004143_050 Hb_004218_290 Hb_004218_290 Hb_000742_260--Hb_004218_290 Hb_113396_010 Hb_113396_010 Hb_000742_260--Hb_113396_010 Hb_011101_010 Hb_011101_010 Hb_000742_260--Hb_011101_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.67036 285.225 79.2957 372.152 0.194864 2.29278
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.82628 5.65262 12.5616 31.4772 102.541

CAGE analysis