Hb_000638_210

Information

Type -
Description -
Location Contig638: 158229-161797
Sequence    

Annotation

kegg
ID tcc:TCM_001499
description Pectin lyase-like superfamily protein isoform 1
nr
ID XP_007048404.1
description Pectin lyase-like superfamily protein isoform 1 [Theobroma cacao]
swissprot
ID A7PZL3
description Probable polygalacturonase OS=Vitis vinifera GN=GSVIVT00026920001 PE=1 SV=1
trembl
ID A0A061DKH7
description Pectin lyase-like superfamily protein isoform 1 OS=Theobroma cacao GN=TCM_001499 PE=3 SV=1
Gene Ontology
ID GO:0005576
description probable polygalacturonase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52028: 158083-158335 , PASA_asmbl_52029: 158535-160077 , PASA_asmbl_52030: 161313-161703
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000638_210 0.0 - - Pectin lyase-like superfamily protein isoform 1 [Theobroma cacao]
2 Hb_005656_140 0.1693106487 transcription factor TF Family: bZIP PREDICTED: basic leucine zipper 9 [Jatropha curcas]
3 Hb_001369_570 0.171449422 - - hypothetical protein JCGZ_26236 [Jatropha curcas]
4 Hb_003078_050 0.1771506056 - - PREDICTED: serine/threonine-protein kinase OXI1 [Jatropha curcas]
5 Hb_009838_060 0.1780765494 - - conserved hypothetical protein [Ricinus communis]
6 Hb_008173_030 0.1812859083 - - PREDICTED: glutathione S-transferase T1-like [Jatropha curcas]
7 Hb_000634_070 0.1845131022 - - PREDICTED: probable receptor-like protein kinase At5g47070 [Jatropha curcas]
8 Hb_001472_130 0.1971204821 - - PREDICTED: uncharacterized protein LOC105645786 [Jatropha curcas]
9 Hb_000210_090 0.1972629767 - - PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG7 [Jatropha curcas]
10 Hb_000072_330 0.1988402972 - - conserved hypothetical protein [Ricinus communis]
11 Hb_012760_010 0.2025338283 - - PREDICTED: uncharacterized protein At4g08330, chloroplastic [Jatropha curcas]
12 Hb_000483_040 0.2029020822 - - Cell division protein ftsH, putative [Ricinus communis]
13 Hb_002110_240 0.2036843664 - - clathrin assembly protein, putative [Ricinus communis]
14 Hb_002572_050 0.2040948387 transcription factor TF Family: PLATZ protein with unknown function [Ricinus communis]
15 Hb_000976_290 0.2041746938 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105646228 [Jatropha curcas]
16 Hb_001794_060 0.2043209106 - - conserved hypothetical protein [Ricinus communis]
17 Hb_129204_060 0.2052276011 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 20 [Jatropha curcas]
18 Hb_002918_150 0.2059427123 transcription factor TF Family: ERF ethylene-responsive element binding protein 1 [Hevea brasiliensis]
19 Hb_003494_060 0.2060151551 - - PREDICTED: uncharacterized protein LOC105644062 isoform X1 [Jatropha curcas]
20 Hb_126380_010 0.2060732237 desease resistance Gene Name: NB-ARC ATP binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000638_210 Hb_000638_210 Hb_005656_140 Hb_005656_140 Hb_000638_210--Hb_005656_140 Hb_001369_570 Hb_001369_570 Hb_000638_210--Hb_001369_570 Hb_003078_050 Hb_003078_050 Hb_000638_210--Hb_003078_050 Hb_009838_060 Hb_009838_060 Hb_000638_210--Hb_009838_060 Hb_008173_030 Hb_008173_030 Hb_000638_210--Hb_008173_030 Hb_000634_070 Hb_000634_070 Hb_000638_210--Hb_000634_070 Hb_003494_060 Hb_003494_060 Hb_005656_140--Hb_003494_060 Hb_002760_040 Hb_002760_040 Hb_005656_140--Hb_002760_040 Hb_005656_140--Hb_009838_060 Hb_129204_060 Hb_129204_060 Hb_005656_140--Hb_129204_060 Hb_001141_360 Hb_001141_360 Hb_005656_140--Hb_001141_360 Hb_002235_240 Hb_002235_240 Hb_005656_140--Hb_002235_240 Hb_002572_050 Hb_002572_050 Hb_001369_570--Hb_002572_050 Hb_000953_050 Hb_000953_050 Hb_001369_570--Hb_000953_050 Hb_028207_040 Hb_028207_040 Hb_001369_570--Hb_028207_040 Hb_005496_180 Hb_005496_180 Hb_001369_570--Hb_005496_180 Hb_001794_060 Hb_001794_060 Hb_001369_570--Hb_001794_060 Hb_001525_010 Hb_001525_010 Hb_001369_570--Hb_001525_010 Hb_003078_050--Hb_000634_070 Hb_000069_230 Hb_000069_230 Hb_003078_050--Hb_000069_230 Hb_003078_050--Hb_028207_040 Hb_003097_100 Hb_003097_100 Hb_003078_050--Hb_003097_100 Hb_000258_380 Hb_000258_380 Hb_003078_050--Hb_000258_380 Hb_001205_030 Hb_001205_030 Hb_003078_050--Hb_001205_030 Hb_009838_060--Hb_003494_060 Hb_009838_060--Hb_001141_360 Hb_012760_010 Hb_012760_010 Hb_009838_060--Hb_012760_010 Hb_001546_110 Hb_001546_110 Hb_009838_060--Hb_001546_110 Hb_185513_010 Hb_185513_010 Hb_009838_060--Hb_185513_010 Hb_002110_240 Hb_002110_240 Hb_008173_030--Hb_002110_240 Hb_000649_240 Hb_000649_240 Hb_008173_030--Hb_000649_240 Hb_000868_100 Hb_000868_100 Hb_008173_030--Hb_000868_100 Hb_000343_180 Hb_000343_180 Hb_008173_030--Hb_000343_180 Hb_002205_010 Hb_002205_010 Hb_008173_030--Hb_002205_010 Hb_000634_070--Hb_003097_100 Hb_000634_070--Hb_000069_230 Hb_000634_070--Hb_000953_050 Hb_000634_070--Hb_001205_030 Hb_000634_070--Hb_028207_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.17734 29.9761 0.79542 2.91045 1.85412 1.5264
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.80125 5.79502 5.77455 4.2714 1.04272

CAGE analysis