Hb_000638_230

Information

Type transcription factor
Description TF Family: MYB
Location Contig638: 165356-166393
Sequence    

Annotation

kegg
ID rcu:RCOM_1463020
description r2r3-myb transcription factor, putative
nr
ID XP_002526637.1
description r2r3-myb transcription factor, putative [Ricinus communis]
swissprot
ID Q9FDW1
description Transcription factor MYB44 OS=Arabidopsis thaliana GN=MYB44 PE=2 SV=1
trembl
ID B9SKW8
description R2r3-myb transcription factor, putative OS=Ricinus communis GN=RCOM_1463020 PE=4 SV=1
Gene Ontology
ID GO:0005488
description r2r3-myb transcription

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000638_230 0.0 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
2 Hb_000046_390 0.0998243464 - - PREDICTED: CASP-like protein 1D1 [Jatropha curcas]
3 Hb_025161_060 0.1182889623 - - hypothetical protein JCGZ_23770 [Jatropha curcas]
4 Hb_025557_070 0.1246924821 transcription factor TF Family: zf-HD hypothetical protein JCGZ_11626 [Jatropha curcas]
5 Hb_000291_240 0.1267032765 - - hypothetical protein POPTR_0005s16430g [Populus trichocarpa]
6 Hb_145975_010 0.1357140606 - - cytochrome P450, putative [Ricinus communis]
7 Hb_003126_120 0.1359932558 - - PREDICTED: cytochrome b561 and DOMON domain-containing protein At5g47530-like [Jatropha curcas]
8 Hb_025557_080 0.1360565679 transcription factor TF Family: zf-HD -
9 Hb_001454_350 0.1374881476 - - PREDICTED: uncharacterized protein LOC105643449 [Jatropha curcas]
10 Hb_006618_100 0.1406412953 transcription factor TF Family: MYB MYB transcriptional factor [Populus tremula x Populus tremuloides]
11 Hb_010217_020 0.1443432945 - - cinnamate 4-hydroxylase [Leucaena leucocephala]
12 Hb_002000_100 0.1496292026 - - PREDICTED: cellulose synthase A catalytic subunit 2 [UDP-forming]-like [Jatropha curcas]
13 Hb_000580_210 0.1496351221 - - PREDICTED: cysteine-rich repeat secretory protein 15 [Jatropha curcas]
14 Hb_005736_110 0.1504243167 transcription factor TF Family: MYB MYB transcriptional factor [Populus tremula x Populus tremuloides]
15 Hb_000991_060 0.1508498674 - - PREDICTED: thaumatin-like protein [Jatropha curcas]
16 Hb_004625_020 0.1527561167 - - PREDICTED: nucleobase-ascorbate transporter 4 [Jatropha curcas]
17 Hb_006252_070 0.1594035255 - - hypothetical protein JCGZ_17254 [Jatropha curcas]
18 Hb_001019_030 0.1615962747 - - PREDICTED: 4-coumarate--CoA ligase 1-like [Jatropha curcas]
19 Hb_002007_330 0.1619208245 - - PREDICTED: putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 5 [Jatropha curcas]
20 Hb_011224_150 0.1624319094 - - PREDICTED: E3 ubiquitin-protein ligase At4g11680 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000638_230 Hb_000638_230 Hb_000046_390 Hb_000046_390 Hb_000638_230--Hb_000046_390 Hb_025161_060 Hb_025161_060 Hb_000638_230--Hb_025161_060 Hb_025557_070 Hb_025557_070 Hb_000638_230--Hb_025557_070 Hb_000291_240 Hb_000291_240 Hb_000638_230--Hb_000291_240 Hb_145975_010 Hb_145975_010 Hb_000638_230--Hb_145975_010 Hb_003126_120 Hb_003126_120 Hb_000638_230--Hb_003126_120 Hb_000046_390--Hb_025161_060 Hb_001454_350 Hb_001454_350 Hb_000046_390--Hb_001454_350 Hb_000046_390--Hb_025557_070 Hb_025557_080 Hb_025557_080 Hb_000046_390--Hb_025557_080 Hb_001019_030 Hb_001019_030 Hb_000046_390--Hb_001019_030 Hb_025161_060--Hb_025557_080 Hb_025161_060--Hb_025557_070 Hb_025161_060--Hb_000291_240 Hb_002808_010 Hb_002808_010 Hb_025161_060--Hb_002808_010 Hb_025557_070--Hb_025557_080 Hb_188281_020 Hb_188281_020 Hb_025557_070--Hb_188281_020 Hb_000188_040 Hb_000188_040 Hb_025557_070--Hb_000188_040 Hb_005116_040 Hb_005116_040 Hb_025557_070--Hb_005116_040 Hb_000991_060 Hb_000991_060 Hb_000291_240--Hb_000991_060 Hb_000291_240--Hb_025557_080 Hb_000291_240--Hb_001454_350 Hb_000243_240 Hb_000243_240 Hb_000291_240--Hb_000243_240 Hb_000291_240--Hb_145975_010 Hb_001141_430 Hb_001141_430 Hb_000291_240--Hb_001141_430 Hb_006618_100 Hb_006618_100 Hb_145975_010--Hb_006618_100 Hb_004757_010 Hb_004757_010 Hb_145975_010--Hb_004757_010 Hb_001343_060 Hb_001343_060 Hb_145975_010--Hb_001343_060 Hb_027411_030 Hb_027411_030 Hb_145975_010--Hb_027411_030 Hb_145975_010--Hb_001141_430 Hb_001269_430 Hb_001269_430 Hb_145975_010--Hb_001269_430 Hb_034688_030 Hb_034688_030 Hb_003126_120--Hb_034688_030 Hb_002000_100 Hb_002000_100 Hb_003126_120--Hb_002000_100 Hb_022693_090 Hb_022693_090 Hb_003126_120--Hb_022693_090 Hb_011314_010 Hb_011314_010 Hb_003126_120--Hb_011314_010 Hb_001360_020 Hb_001360_020 Hb_003126_120--Hb_001360_020 Hb_000367_320 Hb_000367_320 Hb_003126_120--Hb_000367_320
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0317419 1.00127 0.0603797 8.55717 0.096674 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0581336 0 0 0.626881 1.85477

CAGE analysis