Hb_000638_270

Information

Type -
Description -
Location Contig638: 210715-213263
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000638_270 0.0 - - -
2 Hb_000280_030 0.0625903007 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 55-like [Jatropha curcas]
3 Hb_002025_220 0.0984751135 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]
4 Hb_004374_100 0.1043292927 - - PREDICTED: phosphoglycerate mutase-like protein AT74H [Jatropha curcas]
5 Hb_000042_310 0.1152985898 - - Cyclic nucleotide-gated ion channel, putative [Ricinus communis]
6 Hb_003106_160 0.1206251176 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g67520 [Jatropha curcas]
7 Hb_000227_260 0.1230517746 - - PREDICTED: RAN GTPase-activating protein 2 [Jatropha curcas]
8 Hb_011930_060 0.1263976136 - - nitrate transporter, putative [Ricinus communis]
9 Hb_002762_020 0.1272721217 - - hypothetical protein VITISV_043202 [Vitis vinifera]
10 Hb_080922_010 0.1331708779 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
11 Hb_144045_010 0.1344669999 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor NGA1-like [Jatropha curcas]
12 Hb_000809_190 0.1346643574 - - PREDICTED: myosin-6-like [Jatropha curcas]
13 Hb_000705_010 0.1346679983 - - hypothetical protein CICLE_v10027296mg [Citrus clementina]
14 Hb_015824_010 0.1362030874 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Jatropha curcas]
15 Hb_001546_170 0.1415344268 - - ankyrin repeat-containing protein, putative [Ricinus communis]
16 Hb_003536_020 0.1430829082 - - PREDICTED: splicing factor 3A subunit 2 [Jatropha curcas]
17 Hb_001102_130 0.1439487805 transcription factor TF Family: PHD PREDICTED: protein Jade-1 [Populus euphratica]
18 Hb_107373_010 0.1495964225 - - PREDICTED: zeaxanthin epoxidase, chloroplastic-like [Jatropha curcas]
19 Hb_000445_270 0.1503535521 - - ATP binding protein, putative [Ricinus communis]
20 Hb_000115_020 0.1520037767 transcription factor TF Family: C2C2-CO-like zinc finger family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_000638_270 Hb_000638_270 Hb_000280_030 Hb_000280_030 Hb_000638_270--Hb_000280_030 Hb_002025_220 Hb_002025_220 Hb_000638_270--Hb_002025_220 Hb_004374_100 Hb_004374_100 Hb_000638_270--Hb_004374_100 Hb_000042_310 Hb_000042_310 Hb_000638_270--Hb_000042_310 Hb_003106_160 Hb_003106_160 Hb_000638_270--Hb_003106_160 Hb_000227_260 Hb_000227_260 Hb_000638_270--Hb_000227_260 Hb_000280_030--Hb_004374_100 Hb_000280_030--Hb_000042_310 Hb_015824_010 Hb_015824_010 Hb_000280_030--Hb_015824_010 Hb_000705_010 Hb_000705_010 Hb_000280_030--Hb_000705_010 Hb_000280_030--Hb_002025_220 Hb_005305_140 Hb_005305_140 Hb_002025_220--Hb_005305_140 Hb_004109_140 Hb_004109_140 Hb_002025_220--Hb_004109_140 Hb_011930_060 Hb_011930_060 Hb_002025_220--Hb_011930_060 Hb_000834_170 Hb_000834_170 Hb_002025_220--Hb_000834_170 Hb_000809_190 Hb_000809_190 Hb_002025_220--Hb_000809_190 Hb_000445_270 Hb_000445_270 Hb_002025_220--Hb_000445_270 Hb_004374_100--Hb_000042_310 Hb_004374_100--Hb_015824_010 Hb_004374_100--Hb_000705_010 Hb_144045_010 Hb_144045_010 Hb_004374_100--Hb_144045_010 Hb_000042_310--Hb_015824_010 Hb_000042_310--Hb_144045_010 Hb_000042_310--Hb_000705_010 Hb_000007_270 Hb_000007_270 Hb_003106_160--Hb_000007_270 Hb_002762_020 Hb_002762_020 Hb_003106_160--Hb_002762_020 Hb_025325_010 Hb_025325_010 Hb_003106_160--Hb_025325_010 Hb_002609_140 Hb_002609_140 Hb_003106_160--Hb_002609_140 Hb_007426_070 Hb_007426_070 Hb_003106_160--Hb_007426_070 Hb_000227_260--Hb_004374_100 Hb_000227_260--Hb_000280_030 Hb_007253_030 Hb_007253_030 Hb_000227_260--Hb_007253_030 Hb_000227_260--Hb_000042_310 Hb_005977_040 Hb_005977_040 Hb_000227_260--Hb_005977_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.445085 2.19887 0.111146 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.16676 3.09831

CAGE analysis