Hb_000639_010

Information

Type transcription factor
Description TF Family: ERF
Location Contig639: 7023-8920
Sequence    

Annotation

kegg
ID pop:POPTR_0017s11470g
description POPTRDRAFT_778456; hypothetical protein
nr
ID KDP45478.1
description hypothetical protein JCGZ_09727 [Jatropha curcas]
swissprot
ID Q6X5Y6
description Ethylene-responsive transcription factor WRI1 OS=Arabidopsis thaliana GN=WRI1 PE=2 SV=1
trembl
ID A0A067LE00
description Uncharacterized protein OS=Jatropha curcas GN=WRI1 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000639_010 0.0 transcription factor TF Family: ERF hypothetical protein JCGZ_09727 [Jatropha curcas]
2 Hb_168561_010 0.073205629 - - PREDICTED: notchless protein homolog [Jatropha curcas]
3 Hb_000635_100 0.0835960276 - - -
4 Hb_001277_010 0.1112854024 - - unknown [Populus trichocarpa]
5 Hb_006499_020 0.1184922748 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Jatropha curcas]
6 Hb_007101_140 0.1190226351 - - hypothetical protein JCGZ_21777 [Jatropha curcas]
7 Hb_032572_010 0.1215674201 - - PREDICTED: phospholipase A2-alpha [Jatropha curcas]
8 Hb_017043_040 0.1227444875 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
9 Hb_000152_880 0.1277503346 - - -
10 Hb_001430_040 0.1327080521 - - gamma-tocopherol methyltransferase [Hevea brasiliensis]
11 Hb_000186_150 0.1330565623 - - PREDICTED: light-induced protein, chloroplastic-like [Nicotiana sylvestris]
12 Hb_000941_110 0.1382889111 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
13 Hb_004162_140 0.1386223856 - - PREDICTED: serine carboxypeptidase-like 51 [Jatropha curcas]
14 Hb_010264_020 0.1423970918 - - unnamed protein product [Vitis vinifera]
15 Hb_003124_050 0.144609996 - - PREDICTED: uncharacterized protein LOC105641435 [Jatropha curcas]
16 Hb_149507_010 0.1454526724 - - PREDICTED: probable serine/threonine-protein kinase WNK9 [Malus domestica]
17 Hb_000017_140 0.1476473765 - - polygalacturonase, putative [Ricinus communis]
18 Hb_001958_010 0.1504963841 - - hypothetical protein CICLE_v100078532mg, partial [Citrus clementina]
19 Hb_027506_030 0.1518653537 - - 9-cis-epoxycarotenoid dioxygenase, putative [Ricinus communis]
20 Hb_003968_030 0.1527830132 - - UDP-glucosyltransferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000639_010 Hb_000639_010 Hb_168561_010 Hb_168561_010 Hb_000639_010--Hb_168561_010 Hb_000635_100 Hb_000635_100 Hb_000639_010--Hb_000635_100 Hb_001277_010 Hb_001277_010 Hb_000639_010--Hb_001277_010 Hb_006499_020 Hb_006499_020 Hb_000639_010--Hb_006499_020 Hb_007101_140 Hb_007101_140 Hb_000639_010--Hb_007101_140 Hb_032572_010 Hb_032572_010 Hb_000639_010--Hb_032572_010 Hb_168561_010--Hb_006499_020 Hb_004162_140 Hb_004162_140 Hb_168561_010--Hb_004162_140 Hb_116190_010 Hb_116190_010 Hb_168561_010--Hb_116190_010 Hb_168561_010--Hb_000635_100 Hb_168561_010--Hb_007101_140 Hb_001430_040 Hb_001430_040 Hb_000635_100--Hb_001430_040 Hb_003968_030 Hb_003968_030 Hb_000635_100--Hb_003968_030 Hb_000186_150 Hb_000186_150 Hb_000635_100--Hb_000186_150 Hb_010264_020 Hb_010264_020 Hb_000635_100--Hb_010264_020 Hb_000635_100--Hb_001277_010 Hb_001104_220 Hb_001104_220 Hb_001277_010--Hb_001104_220 Hb_149507_010 Hb_149507_010 Hb_001277_010--Hb_149507_010 Hb_001269_660 Hb_001269_660 Hb_001277_010--Hb_001269_660 Hb_000941_110 Hb_000941_110 Hb_001277_010--Hb_000941_110 Hb_008441_010 Hb_008441_010 Hb_001277_010--Hb_008441_010 Hb_006499_020--Hb_116190_010 Hb_000226_110 Hb_000226_110 Hb_006499_020--Hb_000226_110 Hb_003861_090 Hb_003861_090 Hb_006499_020--Hb_003861_090 Hb_000373_060 Hb_000373_060 Hb_006499_020--Hb_000373_060 Hb_000152_880 Hb_000152_880 Hb_007101_140--Hb_000152_880 Hb_007894_080 Hb_007894_080 Hb_007101_140--Hb_007894_080 Hb_000017_140 Hb_000017_140 Hb_007101_140--Hb_000017_140 Hb_029639_030 Hb_029639_030 Hb_007101_140--Hb_029639_030 Hb_000181_220 Hb_000181_220 Hb_007101_140--Hb_000181_220 Hb_007101_140--Hb_004162_140 Hb_001958_010 Hb_001958_010 Hb_032572_010--Hb_001958_010 Hb_027506_030 Hb_027506_030 Hb_032572_010--Hb_027506_030 Hb_009767_060 Hb_009767_060 Hb_032572_010--Hb_009767_060 Hb_085962_010 Hb_085962_010 Hb_032572_010--Hb_085962_010 Hb_000189_180 Hb_000189_180 Hb_032572_010--Hb_000189_180 Hb_000303_060 Hb_000303_060 Hb_032572_010--Hb_000303_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0635078 0.105691 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.04604 0.0783222

CAGE analysis