Hb_000640_070

Information

Type -
Description -
Location Contig640: 50347-60457
Sequence    

Annotation

kegg
ID rcu:RCOM_1347190
description hypothetical protein
nr
ID XP_012082890.1
description PREDICTED: vacuolar protein sorting-associated protein 51 homolog [Jatropha curcas]
swissprot
ID Q54KG3
description Vacuolar protein sorting-associated protein 51 homolog OS=Dictyostelium discoideum GN=vps51 PE=3 SV=1
trembl
ID A0A067K7M7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14026 PE=4 SV=1
Gene Ontology
ID GO:0000145
description vacuolar protein sorting-associated protein 51 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52074: 50316-60066 , PASA_asmbl_52075: 50316-51009
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000640_070 0.0 - - PREDICTED: vacuolar protein sorting-associated protein 51 homolog [Jatropha curcas]
2 Hb_012215_010 0.0546379712 - - PREDICTED: YTH domain-containing family protein 1 [Populus euphratica]
3 Hb_073973_150 0.0566093341 - - PREDICTED: aminoacylase-1 isoform X1 [Jatropha curcas]
4 Hb_008397_010 0.0580129854 - - PREDICTED: uncharacterized protein LOC105640192 isoform X2 [Jatropha curcas]
5 Hb_002784_030 0.0582312293 - - hypothetical protein POPTR_0001s06740g [Populus trichocarpa]
6 Hb_010272_010 0.0591653206 - - PREDICTED: endoplasmic reticulum-Golgi intermediate compartment protein 3 [Jatropha curcas]
7 Hb_001194_020 0.0612187503 - - microtubule associated protein xmap215, putative [Ricinus communis]
8 Hb_007800_020 0.0629699582 - - PREDICTED: probable arabinosyltransferase ARAD1 isoform X1 [Jatropha curcas]
9 Hb_005895_010 0.0682333307 - - PREDICTED: uncharacterized protein LOC105643387 isoform X1 [Jatropha curcas]
10 Hb_000362_170 0.0702787121 - - PREDICTED: uncharacterized protein LOC105635728 [Jatropha curcas]
11 Hb_000664_110 0.0718383029 - - PREDICTED: monoglyceride lipase [Jatropha curcas]
12 Hb_002014_040 0.0734145127 - - site-1 protease, putative [Ricinus communis]
13 Hb_003104_040 0.0753215945 - - PREDICTED: insulin-degrading enzyme isoform X1 [Jatropha curcas]
14 Hb_002539_110 0.0756473029 - - hypothetical protein JCGZ_15697 [Jatropha curcas]
15 Hb_000320_290 0.0792212683 - - PREDICTED: putative lactoylglutathione lyase [Jatropha curcas]
16 Hb_005723_020 0.0808540232 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001002_060 0.0812773316 - - PREDICTED: putative GPI-anchor transamidase [Jatropha curcas]
18 Hb_001856_180 0.081847024 - - PREDICTED: eukaryotic translation initiation factor 3 subunit M [Jatropha curcas]
19 Hb_000737_030 0.0820580647 - - PREDICTED: probable galacturonosyltransferase 3 isoform X1 [Jatropha curcas]
20 Hb_001153_050 0.0843371952 - - PREDICTED: protein FIZZY-RELATED 2 [Jatropha curcas]

Gene co-expression network

sample Hb_000640_070 Hb_000640_070 Hb_012215_010 Hb_012215_010 Hb_000640_070--Hb_012215_010 Hb_073973_150 Hb_073973_150 Hb_000640_070--Hb_073973_150 Hb_008397_010 Hb_008397_010 Hb_000640_070--Hb_008397_010 Hb_002784_030 Hb_002784_030 Hb_000640_070--Hb_002784_030 Hb_010272_010 Hb_010272_010 Hb_000640_070--Hb_010272_010 Hb_001194_020 Hb_001194_020 Hb_000640_070--Hb_001194_020 Hb_002539_110 Hb_002539_110 Hb_012215_010--Hb_002539_110 Hb_012215_010--Hb_010272_010 Hb_000362_170 Hb_000362_170 Hb_012215_010--Hb_000362_170 Hb_000664_110 Hb_000664_110 Hb_012215_010--Hb_000664_110 Hb_001005_030 Hb_001005_030 Hb_012215_010--Hb_001005_030 Hb_073973_150--Hb_001194_020 Hb_073973_150--Hb_008397_010 Hb_000284_230 Hb_000284_230 Hb_073973_150--Hb_000284_230 Hb_003104_040 Hb_003104_040 Hb_073973_150--Hb_003104_040 Hb_002475_040 Hb_002475_040 Hb_073973_150--Hb_002475_040 Hb_008397_010--Hb_001194_020 Hb_000336_020 Hb_000336_020 Hb_008397_010--Hb_000336_020 Hb_008397_010--Hb_000284_230 Hb_007894_160 Hb_007894_160 Hb_008397_010--Hb_007894_160 Hb_001552_030 Hb_001552_030 Hb_002784_030--Hb_001552_030 Hb_002784_030--Hb_012215_010 Hb_002784_030--Hb_008397_010 Hb_002784_030--Hb_002475_040 Hb_002784_030--Hb_073973_150 Hb_005946_210 Hb_005946_210 Hb_010272_010--Hb_005946_210 Hb_010272_010--Hb_002539_110 Hb_010272_010--Hb_000664_110 Hb_002014_040 Hb_002014_040 Hb_010272_010--Hb_002014_040 Hb_001194_020--Hb_000284_230 Hb_006355_020 Hb_006355_020 Hb_001194_020--Hb_006355_020 Hb_001059_130 Hb_001059_130 Hb_001194_020--Hb_001059_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.03813 7.16799 9.34728 10.9752 8.28926 8.92937
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.30621 2.91365 2.896 7.09813 8.06654

CAGE analysis