Hb_000640_080

Information

Type transcription factor
Description TF Family: bZIP
Location Contig640: 64101-64532
Sequence    

Annotation

kegg
ID rcu:RCOM_1347180
description Ocs element-binding factor, putative
nr
ID XP_002515285.1
description Ocs element-binding factor, putative [Ricinus communis]
swissprot
ID P24068
description Ocs element-binding factor 1 OS=Zea mays GN=OBF1 PE=2 SV=2
trembl
ID B9RNE6
description Ocs element-binding factor, putative OS=Ricinus communis GN=RCOM_1347180 PE=4 SV=1
Gene Ontology
ID GO:0005634
description ocs element-binding factor 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 010_O09.ab1: 63614-64387

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000640_080 0.0 transcription factor TF Family: bZIP Ocs element-binding factor, putative [Ricinus communis]
2 Hb_010560_020 0.108225907 - - PREDICTED: uncharacterized protein LOC105649267 [Jatropha curcas]
3 Hb_029866_060 0.1113003871 - - hypothetical protein PRUPE_ppa012628mg [Prunus persica]
4 Hb_000608_370 0.1136015481 - - acyl-carrier-protein [Triadica sebifera]
5 Hb_000139_350 0.1152210706 - - AtGCP3 interacting protein 1 [Theobroma cacao]
6 Hb_129204_030 0.1155009901 - - PREDICTED: vacuolar protein sorting-associated protein 32 homolog 2 [Jatropha curcas]
7 Hb_000258_170 0.1187069574 - - PREDICTED: uncharacterized protein LOC105630437 [Jatropha curcas]
8 Hb_007426_180 0.1192972295 - - PREDICTED: probable inositol transporter 2 [Jatropha curcas]
9 Hb_002454_030 0.1200943433 - - PREDICTED: mitochondrial substrate carrier family protein B [Jatropha curcas]
10 Hb_003929_260 0.1280485272 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000679_090 0.1282417862 - - PREDICTED: pentatricopeptide repeat-containing protein At4g21065-like [Jatropha curcas]
12 Hb_135545_010 0.1283033254 - - calmodulin binding protein, putative [Ricinus communis]
13 Hb_007575_060 0.1296319264 - - hypothetical protein CARUB_v10002094mg, partial [Capsella rubella]
14 Hb_000117_090 0.1307754284 - - PREDICTED: uncharacterized protein LOC105633456 [Jatropha curcas]
15 Hb_002301_140 0.1321335647 - - PREDICTED: uncharacterized protein At4g28440 [Jatropha curcas]
16 Hb_021409_030 0.1321462224 - - PREDICTED: serine/threonine-protein kinase WNK8 isoform X3 [Jatropha curcas]
17 Hb_002399_010 0.1333349497 - - conserved hypothetical protein [Ricinus communis]
18 Hb_002284_010 0.1351699664 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000167_140 0.1356804019 - - PREDICTED: ras-related protein RABF1 [Jatropha curcas]
20 Hb_000123_120 0.1357916144 - - actin depolymerizing factor 4 [Hevea brasiliensis]

Gene co-expression network

sample Hb_000640_080 Hb_000640_080 Hb_010560_020 Hb_010560_020 Hb_000640_080--Hb_010560_020 Hb_029866_060 Hb_029866_060 Hb_000640_080--Hb_029866_060 Hb_000608_370 Hb_000608_370 Hb_000640_080--Hb_000608_370 Hb_000139_350 Hb_000139_350 Hb_000640_080--Hb_000139_350 Hb_129204_030 Hb_129204_030 Hb_000640_080--Hb_129204_030 Hb_000258_170 Hb_000258_170 Hb_000640_080--Hb_000258_170 Hb_004453_170 Hb_004453_170 Hb_010560_020--Hb_004453_170 Hb_000367_160 Hb_000367_160 Hb_010560_020--Hb_000367_160 Hb_000915_090 Hb_000915_090 Hb_010560_020--Hb_000915_090 Hb_000856_380 Hb_000856_380 Hb_010560_020--Hb_000856_380 Hb_000155_200 Hb_000155_200 Hb_010560_020--Hb_000155_200 Hb_000462_130 Hb_000462_130 Hb_010560_020--Hb_000462_130 Hb_003656_070 Hb_003656_070 Hb_029866_060--Hb_003656_070 Hb_008173_090 Hb_008173_090 Hb_029866_060--Hb_008173_090 Hb_002284_010 Hb_002284_010 Hb_029866_060--Hb_002284_010 Hb_000111_330 Hb_000111_330 Hb_029866_060--Hb_000111_330 Hb_002163_020 Hb_002163_020 Hb_029866_060--Hb_002163_020 Hb_029866_060--Hb_129204_030 Hb_000608_370--Hb_129204_030 Hb_007416_030 Hb_007416_030 Hb_000608_370--Hb_007416_030 Hb_001047_230 Hb_001047_230 Hb_000608_370--Hb_001047_230 Hb_000788_090 Hb_000788_090 Hb_000608_370--Hb_000788_090 Hb_000608_370--Hb_000258_170 Hb_002454_030 Hb_002454_030 Hb_000608_370--Hb_002454_030 Hb_135545_010 Hb_135545_010 Hb_000139_350--Hb_135545_010 Hb_000141_040 Hb_000141_040 Hb_000139_350--Hb_000141_040 Hb_007575_060 Hb_007575_060 Hb_000139_350--Hb_007575_060 Hb_012762_050 Hb_012762_050 Hb_000139_350--Hb_012762_050 Hb_001512_070 Hb_001512_070 Hb_000139_350--Hb_001512_070 Hb_002868_010 Hb_002868_010 Hb_000139_350--Hb_002868_010 Hb_000167_140 Hb_000167_140 Hb_129204_030--Hb_000167_140 Hb_129204_030--Hb_001047_230 Hb_021409_030 Hb_021409_030 Hb_129204_030--Hb_021409_030 Hb_000240_090 Hb_000240_090 Hb_129204_030--Hb_000240_090 Hb_001277_070 Hb_001277_070 Hb_129204_030--Hb_001277_070 Hb_000258_170--Hb_021409_030 Hb_138585_060 Hb_138585_060 Hb_000258_170--Hb_138585_060 Hb_005511_160 Hb_005511_160 Hb_000258_170--Hb_005511_160 Hb_000258_170--Hb_000788_090 Hb_000258_170--Hb_001047_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
137.842 115.24 80.5743 61.4556 105.347 63.3207
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
125.858 246.8 206.399 24.9474 23.6865

CAGE analysis