Hb_000640_100

Information

Type -
Description -
Location Contig640: 79181-86017
Sequence    

Annotation

kegg
ID vvi:100243431
description probable glutamyl endopeptidase, chloroplastic
nr
ID XP_012082895.1
description PREDICTED: probable glutamyl endopeptidase, chloroplastic isoform X1 [Jatropha curcas]
swissprot
ID Q8VZF3
description Probable glutamyl endopeptidase, chloroplastic OS=Arabidopsis thaliana GN=GEP PE=2 SV=2
trembl
ID A0A067JZR6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14029 PE=4 SV=1
Gene Ontology
ID GO:0008236
description probable glutamyl chloroplastic isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52080: 79399-86101 , PASA_asmbl_52082: 79811-79928
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000640_100 0.0 - - PREDICTED: probable glutamyl endopeptidase, chloroplastic isoform X1 [Jatropha curcas]
2 Hb_002909_090 0.0494317141 - - PREDICTED: 4-alpha-glucanotransferase DPE2 [Jatropha curcas]
3 Hb_000261_100 0.0840508791 - - PREDICTED: beta-galactosidase 9 isoform X2 [Jatropha curcas]
4 Hb_004545_090 0.0912073132 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000780_190 0.0918534635 transcription factor TF Family: Orphans PREDICTED: histidine kinase 2 [Jatropha curcas]
6 Hb_008024_030 0.0925932033 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105648348 [Jatropha curcas]
7 Hb_127552_040 0.0929990265 - - Uncharacterized protein L484_000643 [Morus notabilis]
8 Hb_002815_030 0.0935697783 - - hypothetical protein CISIN_1g0095162mg, partial [Citrus sinensis]
9 Hb_004920_090 0.0937655982 - - PREDICTED: probable glutamyl endopeptidase, chloroplastic isoform X1 [Jatropha curcas]
10 Hb_000740_100 0.0947199464 - - calpain, putative [Ricinus communis]
11 Hb_000252_050 0.0972507344 - - PREDICTED: pentatricopeptide repeat-containing protein At1g60770 [Jatropha curcas]
12 Hb_009193_120 0.0985087702 desease resistance Gene Name: AAA_22 PREDICTED: putative ATP-dependent RNA helicase DHX33 [Jatropha curcas]
13 Hb_000990_090 0.0992885503 - - PREDICTED: ER membrane protein complex subunit 1 [Jatropha curcas]
14 Hb_001623_480 0.1005336717 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 13 [Jatropha curcas]
15 Hb_000035_410 0.1021579634 - - PREDICTED: eukaryotic translation initiation factor 3 subunit B-like [Jatropha curcas]
16 Hb_011689_060 0.1026389965 - - PREDICTED: putative E3 ubiquitin-protein ligase RF298 [Jatropha curcas]
17 Hb_086287_010 0.1027268987 - - PREDICTED: aminoacylase-1 isoform X1 [Jatropha curcas]
18 Hb_007441_130 0.1033302035 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
19 Hb_000261_030 0.103535361 - - PREDICTED: uncharacterized protein LOC105633147 [Jatropha curcas]
20 Hb_000505_020 0.1036816086 - - PREDICTED: protein S-acyltransferase 24 [Jatropha curcas]

Gene co-expression network

sample Hb_000640_100 Hb_000640_100 Hb_002909_090 Hb_002909_090 Hb_000640_100--Hb_002909_090 Hb_000261_100 Hb_000261_100 Hb_000640_100--Hb_000261_100 Hb_004545_090 Hb_004545_090 Hb_000640_100--Hb_004545_090 Hb_000780_190 Hb_000780_190 Hb_000640_100--Hb_000780_190 Hb_008024_030 Hb_008024_030 Hb_000640_100--Hb_008024_030 Hb_127552_040 Hb_127552_040 Hb_000640_100--Hb_127552_040 Hb_000740_100 Hb_000740_100 Hb_002909_090--Hb_000740_100 Hb_002815_030 Hb_002815_030 Hb_002909_090--Hb_002815_030 Hb_001452_220 Hb_001452_220 Hb_002909_090--Hb_001452_220 Hb_003498_120 Hb_003498_120 Hb_002909_090--Hb_003498_120 Hb_002909_090--Hb_004545_090 Hb_000261_100--Hb_000780_190 Hb_000284_230 Hb_000284_230 Hb_000261_100--Hb_000284_230 Hb_000035_410 Hb_000035_410 Hb_000261_100--Hb_000035_410 Hb_004701_050 Hb_004701_050 Hb_000261_100--Hb_004701_050 Hb_000183_050 Hb_000183_050 Hb_000261_100--Hb_000183_050 Hb_004109_370 Hb_004109_370 Hb_000261_100--Hb_004109_370 Hb_100215_010 Hb_100215_010 Hb_004545_090--Hb_100215_010 Hb_003010_020 Hb_003010_020 Hb_004545_090--Hb_003010_020 Hb_000990_090 Hb_000990_090 Hb_004545_090--Hb_000990_090 Hb_000023_190 Hb_000023_190 Hb_004545_090--Hb_000023_190 Hb_011918_040 Hb_011918_040 Hb_004545_090--Hb_011918_040 Hb_000252_050 Hb_000252_050 Hb_000780_190--Hb_000252_050 Hb_041828_010 Hb_041828_010 Hb_000780_190--Hb_041828_010 Hb_012760_100 Hb_012760_100 Hb_000780_190--Hb_012760_100 Hb_000004_030 Hb_000004_030 Hb_000780_190--Hb_000004_030 Hb_000780_190--Hb_004701_050 Hb_004920_090 Hb_004920_090 Hb_008024_030--Hb_004920_090 Hb_027380_140 Hb_027380_140 Hb_008024_030--Hb_027380_140 Hb_001623_480 Hb_001623_480 Hb_008024_030--Hb_001623_480 Hb_008024_030--Hb_000740_100 Hb_000671_070 Hb_000671_070 Hb_008024_030--Hb_000671_070 Hb_012395_140 Hb_012395_140 Hb_008024_030--Hb_012395_140 Hb_188126_010 Hb_188126_010 Hb_127552_040--Hb_188126_010 Hb_127552_040--Hb_002909_090 Hb_005801_020 Hb_005801_020 Hb_127552_040--Hb_005801_020 Hb_000027_190 Hb_000027_190 Hb_127552_040--Hb_000027_190 Hb_000661_030 Hb_000661_030 Hb_127552_040--Hb_000661_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
24.3387 19.0252 13.0901 18.927 22.8349 27.9227
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.1259 4.16444 11.3119 27.7078 26.5433

CAGE analysis