Hb_000640_110

Information

Type -
Description -
Location Contig640: 87230-89713
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52084: 87423-87769 , PASA_asmbl_52085: 88663-89832 , PASA_asmbl_52086: 88470-89832
cDNA
(Sanger)
(ID:Location)		 023_E18.ab1: 88470-89832 , 031_K09.ab1: 89123-89832

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000640_110 0.0 - - -
2 Hb_005597_010 0.1106353826 - - -
3 Hb_004242_210 0.2005266513 - - PREDICTED: uncharacterized protein LOC105633248 [Jatropha curcas]
4 Hb_143800_010 0.2569472588 - - hypothetical protein POPTR_0010s21410g, partial [Populus trichocarpa]
5 Hb_030885_020 0.2818284398 - - -
6 Hb_000415_070 0.2960633412 - - -
7 Hb_130067_010 0.3049771765 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
8 Hb_000317_130 0.3105381162 - - vacuolar membrane protein pep3, putative [Ricinus communis]
9 Hb_154381_010 0.3148613931 - - -
10 Hb_002368_090 0.317997044 - - PREDICTED: cationic peroxidase 1-like [Populus euphratica]
11 Hb_003551_040 0.3192940162 - - PREDICTED: uncharacterized protein LOC103331076 [Prunus mume]
12 Hb_063480_010 0.3251742895 - - PREDICTED: endoribonuclease Dicer homolog 1-like isoform X2 [Pyrus x bretschneideri]
13 Hb_047691_010 0.3262783766 - - Uncharacterized protein F383_01974 [Gossypium arboreum]
14 Hb_003695_010 0.3297890493 - - PREDICTED: uncharacterized protein LOC104104926 [Nicotiana tomentosiformis]
15 Hb_022891_010 0.3309185382 - - chitinase-like protein [Hevea brasiliensis]
16 Hb_004770_060 0.333456638 - - unnamed protein product, partial [Coffea canephora]
17 Hb_000416_120 0.3351888199 - - Putative LRR receptor-like serine/threonine-protein kinase, partial [Glycine soja]
18 Hb_021068_030 0.3385329263 transcription factor TF Family: M-type hypothetical protein B456_010G032700 [Gossypium raimondii]
19 Hb_002942_180 0.3385976118 - - phosphate transporter [Manihot esculenta]
20 Hb_002391_090 0.3389027452 - - PREDICTED: IST1-like protein [Jatropha curcas]

Gene co-expression network

sample Hb_000640_110 Hb_000640_110 Hb_005597_010 Hb_005597_010 Hb_000640_110--Hb_005597_010 Hb_004242_210 Hb_004242_210 Hb_000640_110--Hb_004242_210 Hb_143800_010 Hb_143800_010 Hb_000640_110--Hb_143800_010 Hb_030885_020 Hb_030885_020 Hb_000640_110--Hb_030885_020 Hb_000415_070 Hb_000415_070 Hb_000640_110--Hb_000415_070 Hb_130067_010 Hb_130067_010 Hb_000640_110--Hb_130067_010 Hb_005597_010--Hb_004242_210 Hb_005597_010--Hb_030885_020 Hb_003455_010 Hb_003455_010 Hb_005597_010--Hb_003455_010 Hb_004770_060 Hb_004770_060 Hb_005597_010--Hb_004770_060 Hb_000416_120 Hb_000416_120 Hb_005597_010--Hb_000416_120 Hb_003643_030 Hb_003643_030 Hb_004242_210--Hb_003643_030 Hb_002217_490 Hb_002217_490 Hb_004242_210--Hb_002217_490 Hb_002311_460 Hb_002311_460 Hb_004242_210--Hb_002311_460 Hb_000737_020 Hb_000737_020 Hb_004242_210--Hb_000737_020 Hb_063480_010 Hb_063480_010 Hb_143800_010--Hb_063480_010 Hb_143800_010--Hb_000415_070 Hb_151939_010 Hb_151939_010 Hb_143800_010--Hb_151939_010 Hb_000136_180 Hb_000136_180 Hb_143800_010--Hb_000136_180 Hb_005542_090 Hb_005542_090 Hb_143800_010--Hb_005542_090 Hb_154381_010 Hb_154381_010 Hb_030885_020--Hb_154381_010 Hb_003551_040 Hb_003551_040 Hb_030885_020--Hb_003551_040 Hb_030885_020--Hb_004770_060 Hb_060585_010 Hb_060585_010 Hb_030885_020--Hb_060585_010 Hb_020532_010 Hb_020532_010 Hb_030885_020--Hb_020532_010 Hb_001517_030 Hb_001517_030 Hb_000415_070--Hb_001517_030 Hb_000415_070--Hb_005542_090 Hb_017462_010 Hb_017462_010 Hb_000415_070--Hb_017462_010 Hb_015026_150 Hb_015026_150 Hb_000415_070--Hb_015026_150 Hb_000415_070--Hb_000136_180 Hb_000029_100 Hb_000029_100 Hb_130067_010--Hb_000029_100 Hb_000603_070 Hb_000603_070 Hb_130067_010--Hb_000603_070 Hb_001916_080 Hb_001916_080 Hb_130067_010--Hb_001916_080 Hb_000157_080 Hb_000157_080 Hb_130067_010--Hb_000157_080 Hb_090158_010 Hb_090158_010 Hb_130067_010--Hb_090158_010 Hb_000656_190 Hb_000656_190 Hb_130067_010--Hb_000656_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0825069 0.480991 0 0.397313
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.193457 0 0.340116 0

CAGE analysis