Hb_000640_160

Information

Type -
Description -
Location Contig640: 122308-126480
Sequence    

Annotation

kegg
ID rcu:RCOM_1346960
description ATP-dependent Clp protease proteolytic subunit, putative (EC:3.4.21.92)
nr
ID XP_002515273.1
description ATP-dependent Clp protease proteolytic subunit, putative [Ricinus communis]
swissprot
ID Q9S834
description ATP-dependent Clp protease proteolytic subunit 5, chloroplastic OS=Arabidopsis thaliana GN=CLPP5 PE=1 SV=1
trembl
ID B9RND4
description ATP-dependent Clp protease proteolytic subunit OS=Ricinus communis GN=RCOM_1346960 PE=3 SV=1
Gene Ontology
ID GO:0009534
description atp-dependent clp protease proteolytic subunit 5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52097: 122353-126546 , PASA_asmbl_52098: 123588-124010 , PASA_asmbl_52101: 124304-124402
cDNA
(Sanger)
(ID:Location)		 037_F17.ab1: 123361-126528 , 045_D07.ab1: 123361-126475 , 050_K15.ab1: 123360-126489 , 051_L16.ab1: 123347-126475

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000640_160 0.0 - - ATP-dependent Clp protease proteolytic subunit, putative [Ricinus communis]
2 Hb_003225_020 0.0517665656 transcription factor TF Family: HB PREDICTED: homeobox protein HAT3.1 [Jatropha curcas]
3 Hb_005731_110 0.0628729823 - - PREDICTED: uncharacterized protein LOC105108367 isoform X1 [Populus euphratica]
4 Hb_001619_050 0.0720144586 - - PREDICTED: uncharacterized protein LOC105630599 isoform X1 [Jatropha curcas]
5 Hb_032202_080 0.0737021964 - - PREDICTED: peroxisome biogenesis protein 16-like isoform X1 [Jatropha curcas]
6 Hb_004096_240 0.0758286491 - - PREDICTED: uncharacterized protein LOC105638702 [Jatropha curcas]
7 Hb_138435_010 0.0759238124 transcription factor TF Family: SWI/SNF-BAF60b brg-1 associated factor, putative [Ricinus communis]
8 Hb_031284_010 0.079728184 - - PREDICTED: uncharacterized protein LOC105633543 [Jatropha curcas]
9 Hb_000663_020 0.0823705204 - - PREDICTED: alternative NAD(P)H-ubiquinone oxidoreductase C1, chloroplastic/mitochondrial isoform X1 [Jatropha curcas]
10 Hb_000300_180 0.083313686 - - transcription initiation factor brf1, putative [Ricinus communis]
11 Hb_025557_050 0.0840255732 - - PREDICTED: pentatricopeptide repeat-containing protein At1g74630 [Jatropha curcas]
12 Hb_000120_210 0.0856983751 - - PREDICTED: uncharacterized protein LOC105630189 [Jatropha curcas]
13 Hb_000224_150 0.0861520891 - - PREDICTED: 3-oxoacyl-[acyl-carrier-protein] synthase, mitochondrial [Jatropha curcas]
14 Hb_000254_100 0.0871063648 - - PREDICTED: glyoxylate/hydroxypyruvate reductase A HPR2 [Jatropha curcas]
15 Hb_065755_030 0.0877095851 - - -
16 Hb_001776_060 0.0885182437 - - PREDICTED: methyl-CpG-binding domain-containing protein 5-like [Jatropha curcas]
17 Hb_077026_010 0.088642644 - - PREDICTED: phosphatidylinositol 4-kinase alpha 2 [Jatropha curcas]
18 Hb_021650_010 0.0890956154 - - hypothetical protein JCGZ_09648 [Jatropha curcas]
19 Hb_005162_110 0.0897144679 - - PREDICTED: uncharacterized protein LOC105648430 [Jatropha curcas]
20 Hb_008059_010 0.0900022718 - - PREDICTED: pentatricopeptide repeat-containing protein At5g04810, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_000640_160 Hb_000640_160 Hb_003225_020 Hb_003225_020 Hb_000640_160--Hb_003225_020 Hb_005731_110 Hb_005731_110 Hb_000640_160--Hb_005731_110 Hb_001619_050 Hb_001619_050 Hb_000640_160--Hb_001619_050 Hb_032202_080 Hb_032202_080 Hb_000640_160--Hb_032202_080 Hb_004096_240 Hb_004096_240 Hb_000640_160--Hb_004096_240 Hb_138435_010 Hb_138435_010 Hb_000640_160--Hb_138435_010 Hb_007821_020 Hb_007821_020 Hb_003225_020--Hb_007821_020 Hb_031284_010 Hb_031284_010 Hb_003225_020--Hb_031284_010 Hb_003225_020--Hb_001619_050 Hb_007283_010 Hb_007283_010 Hb_003225_020--Hb_007283_010 Hb_003225_020--Hb_005731_110 Hb_000663_020 Hb_000663_020 Hb_005731_110--Hb_000663_020 Hb_000959_220 Hb_000959_220 Hb_005731_110--Hb_000959_220 Hb_005162_110 Hb_005162_110 Hb_005731_110--Hb_005162_110 Hb_065755_030 Hb_065755_030 Hb_005731_110--Hb_065755_030 Hb_000445_140 Hb_000445_140 Hb_001619_050--Hb_000445_140 Hb_001014_100 Hb_001014_100 Hb_001619_050--Hb_001014_100 Hb_017151_010 Hb_017151_010 Hb_001619_050--Hb_017151_010 Hb_002870_020 Hb_002870_020 Hb_001619_050--Hb_002870_020 Hb_000457_230 Hb_000457_230 Hb_032202_080--Hb_000457_230 Hb_002615_120 Hb_002615_120 Hb_032202_080--Hb_002615_120 Hb_001776_060 Hb_001776_060 Hb_032202_080--Hb_001776_060 Hb_032202_080--Hb_138435_010 Hb_008568_020 Hb_008568_020 Hb_032202_080--Hb_008568_020 Hb_001405_190 Hb_001405_190 Hb_032202_080--Hb_001405_190 Hb_000120_210 Hb_000120_210 Hb_004096_240--Hb_000120_210 Hb_030414_040 Hb_030414_040 Hb_004096_240--Hb_030414_040 Hb_004096_240--Hb_031284_010 Hb_000375_390 Hb_000375_390 Hb_004096_240--Hb_000375_390 Hb_021943_080 Hb_021943_080 Hb_004096_240--Hb_021943_080 Hb_003186_020 Hb_003186_020 Hb_004096_240--Hb_003186_020 Hb_001153_210 Hb_001153_210 Hb_138435_010--Hb_001153_210 Hb_138435_010--Hb_003186_020 Hb_138435_010--Hb_031284_010 Hb_000847_080 Hb_000847_080 Hb_138435_010--Hb_000847_080 Hb_001226_150 Hb_001226_150 Hb_138435_010--Hb_001226_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
61.84 54.8693 119.861 46.2204 58.0969 58.4885
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
48.2167 43.3736 36.5662 30.4894 86.5369

CAGE analysis