Hb_000640_230

Information

Type -
Description -
Location Contig640: 187112-191519
Sequence    

Annotation

kegg
ID rcu:RCOM_1346550
description hypothetical protein
nr
ID XP_002515262.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RNC3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1346550 PE=4 SV=1
Gene Ontology
ID GO:0005768
description heme binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52116: 187132-191428
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000640_230 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_004044_020 0.0870410925 - - PREDICTED: nudix hydrolase 19, chloroplastic [Jatropha curcas]
3 Hb_003097_150 0.0888952698 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 24 [Jatropha curcas]
4 Hb_002007_250 0.0934576811 - - conserved hypothetical protein [Ricinus communis]
5 Hb_010128_130 0.0969787251 - - PREDICTED: G patch domain-containing protein 8 isoform X1 [Jatropha curcas]
6 Hb_000207_310 0.0980641921 - - PREDICTED: uncharacterized protein LOC105633932 [Jatropha curcas]
7 Hb_002367_130 0.0981094562 - - UNC-50 family protein isoform 1 [Theobroma cacao]
8 Hb_003126_040 0.0986923489 - - conserved hypothetical protein [Ricinus communis]
9 Hb_143629_010 0.099459666 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
10 Hb_001541_260 0.101102051 - - PREDICTED: protein MAK16 homolog [Jatropha curcas]
11 Hb_003746_040 0.1014364359 - - PREDICTED: protein N-terminal glutamine amidohydrolase [Jatropha curcas]
12 Hb_066182_010 0.1027278943 - - PREDICTED: guanine nucleotide-binding protein subunit beta-like protein [Jatropha curcas]
13 Hb_054865_100 0.1033649368 - - PREDICTED: probable protein S-acyltransferase 12 isoform X1 [Jatropha curcas]
14 Hb_001369_420 0.1038045509 - - PREDICTED: E3 ubiquitin protein ligase RIN2 [Jatropha curcas]
15 Hb_000116_180 0.1043112907 - - PREDICTED: heterogeneous nuclear ribonucleoprotein H isoform X1 [Jatropha curcas]
16 Hb_089032_020 0.1045770215 - - PREDICTED: BRCA1-associated protein [Jatropha curcas]
17 Hb_005618_160 0.1053550396 - - PREDICTED: putative proline--tRNA ligase C19C7.06 [Jatropha curcas]
18 Hb_075481_030 0.1056054857 - - PREDICTED: DNA-binding protein RHL1 isoform X3 [Jatropha curcas]
19 Hb_000236_100 0.1061699695 - - Dynein alpha chain, flagellar outer arm [Gossypium arboreum]
20 Hb_002893_020 0.1072650628 - - hypothetical protein JCGZ_21319 [Jatropha curcas]

Gene co-expression network

sample Hb_000640_230 Hb_000640_230 Hb_004044_020 Hb_004044_020 Hb_000640_230--Hb_004044_020 Hb_003097_150 Hb_003097_150 Hb_000640_230--Hb_003097_150 Hb_002007_250 Hb_002007_250 Hb_000640_230--Hb_002007_250 Hb_010128_130 Hb_010128_130 Hb_000640_230--Hb_010128_130 Hb_000207_310 Hb_000207_310 Hb_000640_230--Hb_000207_310 Hb_002367_130 Hb_002367_130 Hb_000640_230--Hb_002367_130 Hb_000088_200 Hb_000088_200 Hb_004044_020--Hb_000088_200 Hb_000684_420 Hb_000684_420 Hb_004044_020--Hb_000684_420 Hb_000236_280 Hb_000236_280 Hb_004044_020--Hb_000236_280 Hb_031939_010 Hb_031939_010 Hb_004044_020--Hb_031939_010 Hb_012305_070 Hb_012305_070 Hb_004044_020--Hb_012305_070 Hb_004525_100 Hb_004525_100 Hb_004044_020--Hb_004525_100 Hb_000300_060 Hb_000300_060 Hb_003097_150--Hb_000300_060 Hb_004600_040 Hb_004600_040 Hb_003097_150--Hb_004600_040 Hb_005237_010 Hb_005237_010 Hb_003097_150--Hb_005237_010 Hb_002609_110 Hb_002609_110 Hb_003097_150--Hb_002609_110 Hb_002149_020 Hb_002149_020 Hb_003097_150--Hb_002149_020 Hb_001571_040 Hb_001571_040 Hb_003097_150--Hb_001571_040 Hb_012654_010 Hb_012654_010 Hb_002007_250--Hb_012654_010 Hb_001504_160 Hb_001504_160 Hb_002007_250--Hb_001504_160 Hb_000076_080 Hb_000076_080 Hb_002007_250--Hb_000076_080 Hb_002007_250--Hb_004044_020 Hb_000107_100 Hb_000107_100 Hb_002007_250--Hb_000107_100 Hb_004724_360 Hb_004724_360 Hb_002007_250--Hb_004724_360 Hb_001741_140 Hb_001741_140 Hb_010128_130--Hb_001741_140 Hb_000107_050 Hb_000107_050 Hb_010128_130--Hb_000107_050 Hb_000933_180 Hb_000933_180 Hb_010128_130--Hb_000933_180 Hb_001221_230 Hb_001221_230 Hb_010128_130--Hb_001221_230 Hb_009767_120 Hb_009767_120 Hb_010128_130--Hb_009767_120 Hb_012675_090 Hb_012675_090 Hb_010128_130--Hb_012675_090 Hb_001828_160 Hb_001828_160 Hb_000207_310--Hb_001828_160 Hb_000116_180 Hb_000116_180 Hb_000207_310--Hb_000116_180 Hb_002890_020 Hb_002890_020 Hb_000207_310--Hb_002890_020 Hb_000913_050 Hb_000913_050 Hb_000207_310--Hb_000913_050 Hb_000029_130 Hb_000029_130 Hb_000207_310--Hb_000029_130 Hb_108216_040 Hb_108216_040 Hb_000207_310--Hb_108216_040 Hb_002367_130--Hb_000116_180 Hb_002367_130--Hb_001828_160 Hb_002367_130--Hb_000207_310 Hb_003018_130 Hb_003018_130 Hb_002367_130--Hb_003018_130 Hb_021422_010 Hb_021422_010 Hb_002367_130--Hb_021422_010 Hb_001369_420 Hb_001369_420 Hb_002367_130--Hb_001369_420
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
26.5117 8.61879 6.65858 8.98556 34.5166 20.7853
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.3459 22.2711 9.96988 10.1985 7.66909

CAGE analysis