Hb_000640_240

Information

Type -
Description -
Location Contig640: 197173-219324
Sequence    

Annotation

kegg
ID rcu:RCOM_1346540
description carboxypeptidase regulatory region-containingprotein, putative
nr
ID XP_002515261.1
description carboxypeptidase regulatory region-containingprotein, putative [Ricinus communis]
swissprot
ID Q6GQT9
description Nodal modulator 1 OS=Mus musculus GN=Nomo1 PE=1 SV=1
trembl
ID B9RNC2
description Carboxypeptidase regulatory region-containingprotein, putative OS=Ricinus communis GN=RCOM_1346540 PE=4 SV=1
Gene Ontology
ID GO:0005774
description nodal modulator 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52118: 218330-218918
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000640_240 0.0 - - carboxypeptidase regulatory region-containingprotein, putative [Ricinus communis]
2 Hb_001358_030 0.0586743265 - - PREDICTED: 40S ribosomal protein S3-3-like [Populus euphratica]
3 Hb_003126_050 0.0606695045 - - PREDICTED: cell cycle checkpoint protein RAD17 isoform X1 [Jatropha curcas]
4 Hb_066182_010 0.0663469432 - - PREDICTED: guanine nucleotide-binding protein subunit beta-like protein [Jatropha curcas]
5 Hb_096563_010 0.0664794301 - - PREDICTED: cytoplasmic tRNA 2-thiolation protein 1 [Prunus mume]
6 Hb_011970_030 0.0698127825 - - PREDICTED: uncharacterized protein LOC105641805 [Jatropha curcas]
7 Hb_003417_020 0.0711046774 - - PREDICTED: 50S ribosomal protein L13, chloroplastic [Jatropha curcas]
8 Hb_000085_160 0.0723438292 - - hypothetical protein CICLE_v10009012mg [Citrus clementina]
9 Hb_002043_190 0.0729698659 - - rwd domain-containing protein, putative [Ricinus communis]
10 Hb_002233_150 0.0737483755 - - PREDICTED: uncharacterized protein LOC105633093 [Jatropha curcas]
11 Hb_000041_270 0.0738477087 - - PREDICTED: mitochondrial import receptor subunit TOM40-1 [Jatropha curcas]
12 Hb_040262_010 0.0753244938 - - PREDICTED: aspartate carbamoyltransferase 1, chloroplastic [Jatropha curcas]
13 Hb_007317_110 0.078380735 - - PREDICTED: uncharacterized RNA-binding protein C660.15-like [Jatropha curcas]
14 Hb_000003_160 0.0790048975 - - PREDICTED: mitochondrial import receptor subunit TOM40-1 [Jatropha curcas]
15 Hb_105386_010 0.0799107707 - - PREDICTED: 60S ribosomal protein L7-2-like [Jatropha curcas]
16 Hb_000300_060 0.0806496784 - - PREDICTED: F-box protein SKIP24 [Jatropha curcas]
17 Hb_001677_210 0.080812191 - - hypothetical protein JCGZ_01374 [Jatropha curcas]
18 Hb_054865_100 0.081574247 - - PREDICTED: probable protein S-acyltransferase 12 isoform X1 [Jatropha curcas]
19 Hb_005618_160 0.0816476672 - - PREDICTED: putative proline--tRNA ligase C19C7.06 [Jatropha curcas]
20 Hb_002660_080 0.0819844286 - - 60S ribosomal protein L12A [Hevea brasiliensis]

Gene co-expression network

sample Hb_000640_240 Hb_000640_240 Hb_001358_030 Hb_001358_030 Hb_000640_240--Hb_001358_030 Hb_003126_050 Hb_003126_050 Hb_000640_240--Hb_003126_050 Hb_066182_010 Hb_066182_010 Hb_000640_240--Hb_066182_010 Hb_096563_010 Hb_096563_010 Hb_000640_240--Hb_096563_010 Hb_011970_030 Hb_011970_030 Hb_000640_240--Hb_011970_030 Hb_003417_020 Hb_003417_020 Hb_000640_240--Hb_003417_020 Hb_012008_020 Hb_012008_020 Hb_001358_030--Hb_012008_020 Hb_105386_010 Hb_105386_010 Hb_001358_030--Hb_105386_010 Hb_001358_030--Hb_096563_010 Hb_002660_080 Hb_002660_080 Hb_001358_030--Hb_002660_080 Hb_000189_340 Hb_000189_340 Hb_001358_030--Hb_000189_340 Hb_003126_050--Hb_003417_020 Hb_003092_040 Hb_003092_040 Hb_003126_050--Hb_003092_040 Hb_000041_270 Hb_000041_270 Hb_003126_050--Hb_000041_270 Hb_003126_050--Hb_096563_010 Hb_007691_030 Hb_007691_030 Hb_003126_050--Hb_007691_030 Hb_054865_100 Hb_054865_100 Hb_066182_010--Hb_054865_100 Hb_000300_060 Hb_000300_060 Hb_066182_010--Hb_000300_060 Hb_005276_210 Hb_005276_210 Hb_066182_010--Hb_005276_210 Hb_002081_130 Hb_002081_130 Hb_066182_010--Hb_002081_130 Hb_002149_020 Hb_002149_020 Hb_066182_010--Hb_002149_020 Hb_000661_250 Hb_000661_250 Hb_096563_010--Hb_000661_250 Hb_003010_030 Hb_003010_030 Hb_096563_010--Hb_003010_030 Hb_001301_160 Hb_001301_160 Hb_096563_010--Hb_001301_160 Hb_001259_090 Hb_001259_090 Hb_096563_010--Hb_001259_090 Hb_000059_330 Hb_000059_330 Hb_096563_010--Hb_000059_330 Hb_000210_180 Hb_000210_180 Hb_096563_010--Hb_000210_180 Hb_003292_040 Hb_003292_040 Hb_011970_030--Hb_003292_040 Hb_002233_150 Hb_002233_150 Hb_011970_030--Hb_002233_150 Hb_005618_160 Hb_005618_160 Hb_011970_030--Hb_005618_160 Hb_001454_400 Hb_001454_400 Hb_011970_030--Hb_001454_400 Hb_001564_130 Hb_001564_130 Hb_011970_030--Hb_001564_130 Hb_001305_010 Hb_001305_010 Hb_003417_020--Hb_001305_010 Hb_003417_020--Hb_007691_030 Hb_003175_010 Hb_003175_010 Hb_003417_020--Hb_003175_010 Hb_019280_040 Hb_019280_040 Hb_003417_020--Hb_019280_040 Hb_007951_060 Hb_007951_060 Hb_003417_020--Hb_007951_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.48782 4.12648 4.01217 5.24366 8.23525 8.88438
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.86037 8.83167 4.7066 5.36839 1.96639

CAGE analysis