Hb_000640_280

Information

Type -
Description -
Location Contig640: 256948-260086
Sequence    

Annotation

kegg
ID rcu:RCOM_1346470
description Stachyose synthase precursor, putative (EC:2.4.1.67)
nr
ID XP_002515254.1
description Stachyose synthase precursor, putative [Ricinus communis]
swissprot
ID Q93XK2
description Stachyose synthase OS=Pisum sativum GN=STS1 PE=1 SV=1
trembl
ID B9RNB5
description Stachyose synthase, putative OS=Ricinus communis GN=RCOM_1346470 PE=4 SV=1
Gene Ontology
ID GO:0047268
description stachyose synthase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52123: 256807-256970 , PASA_asmbl_52124: 257341-257856 , PASA_asmbl_52126: 258346-258950 , PASA_asmbl_52127: 259000-259835
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000640_280 0.0 - - Stachyose synthase precursor, putative [Ricinus communis]
2 Hb_000002_280 0.1760506756 - - PREDICTED: two-pore potassium channel 1 [Jatropha curcas]
3 Hb_000243_310 0.1919596349 - - lactoylglutathione lyase, putative [Ricinus communis]
4 Hb_002890_350 0.1921472808 - - UDP-glucuronosyltransferase, putative [Ricinus communis]
5 Hb_000300_240 0.1982219987 - - Sodium/potassium/calcium exchanger 6 precursor, putative [Ricinus communis]
6 Hb_011344_150 0.2002985793 - - polyprotein [Citrus endogenous pararetrovirus]
7 Hb_000392_510 0.2047976307 - - PREDICTED: mitochondrial outer membrane protein porin of 36 kDa-like [Jatropha curcas]
8 Hb_001899_040 0.206081391 - - PREDICTED: cyclic nucleotide-gated ion channel 2-like [Jatropha curcas]
9 Hb_166828_010 0.2085480115 - - -
10 Hb_000320_170 0.2093066955 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001205_170 0.2096363582 - - PREDICTED: uncharacterized protein LOC105633940 isoform X1 [Jatropha curcas]
12 Hb_034013_010 0.21050963 - - hypothetical protein JCGZ_21944 [Jatropha curcas]
13 Hb_002092_140 0.2118163858 - - hypothetical protein EUGRSUZ_B00708, partial [Eucalyptus grandis]
14 Hb_003867_030 0.2125930678 - - -
15 Hb_002836_030 0.2126700646 - - Auxin-induced protein 5NG4, putative [Ricinus communis]
16 Hb_003582_050 0.2136434354 - - hypothetical protein POPTR_0008s13950g [Populus trichocarpa]
17 Hb_027337_050 0.2174142544 - - polyprotein [Citrus endogenous pararetrovirus]
18 Hb_144813_010 0.2174923358 - - PREDICTED: uncharacterized protein LOC105781565 [Gossypium raimondii]
19 Hb_004884_210 0.2263389536 - - PREDICTED: mitoferrin-like [Jatropha curcas]
20 Hb_010091_040 0.2281895373 - - PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]

Gene co-expression network

sample Hb_000640_280 Hb_000640_280 Hb_000002_280 Hb_000002_280 Hb_000640_280--Hb_000002_280 Hb_000243_310 Hb_000243_310 Hb_000640_280--Hb_000243_310 Hb_002890_350 Hb_002890_350 Hb_000640_280--Hb_002890_350 Hb_000300_240 Hb_000300_240 Hb_000640_280--Hb_000300_240 Hb_011344_150 Hb_011344_150 Hb_000640_280--Hb_011344_150 Hb_000392_510 Hb_000392_510 Hb_000640_280--Hb_000392_510 Hb_000002_280--Hb_000300_240 Hb_002092_140 Hb_002092_140 Hb_000002_280--Hb_002092_140 Hb_166828_010 Hb_166828_010 Hb_000002_280--Hb_166828_010 Hb_002571_050 Hb_002571_050 Hb_000002_280--Hb_002571_050 Hb_080873_010 Hb_080873_010 Hb_000002_280--Hb_080873_010 Hb_010091_040 Hb_010091_040 Hb_000002_280--Hb_010091_040 Hb_000243_310--Hb_002571_050 Hb_034013_010 Hb_034013_010 Hb_000243_310--Hb_034013_010 Hb_000243_310--Hb_000002_280 Hb_000029_180 Hb_000029_180 Hb_000243_310--Hb_000029_180 Hb_002025_240 Hb_002025_240 Hb_000243_310--Hb_002025_240 Hb_001899_040 Hb_001899_040 Hb_000243_310--Hb_001899_040 Hb_003867_030 Hb_003867_030 Hb_002890_350--Hb_003867_030 Hb_009785_020 Hb_009785_020 Hb_002890_350--Hb_009785_020 Hb_009403_010 Hb_009403_010 Hb_002890_350--Hb_009403_010 Hb_002890_350--Hb_034013_010 Hb_002890_350--Hb_000392_510 Hb_000300_240--Hb_166828_010 Hb_000300_240--Hb_002092_140 Hb_000320_170 Hb_000320_170 Hb_000300_240--Hb_000320_170 Hb_002836_030 Hb_002836_030 Hb_000300_240--Hb_002836_030 Hb_003582_050 Hb_003582_050 Hb_000300_240--Hb_003582_050 Hb_006040_080 Hb_006040_080 Hb_011344_150--Hb_006040_080 Hb_011344_150--Hb_010091_040 Hb_052764_010 Hb_052764_010 Hb_011344_150--Hb_052764_010 Hb_011344_150--Hb_000002_280 Hb_042141_010 Hb_042141_010 Hb_011344_150--Hb_042141_010 Hb_000286_180 Hb_000286_180 Hb_000392_510--Hb_000286_180 Hb_007137_020 Hb_007137_020 Hb_000392_510--Hb_007137_020 Hb_000392_510--Hb_001899_040 Hb_002218_060 Hb_002218_060 Hb_000392_510--Hb_002218_060 Hb_009898_060 Hb_009898_060 Hb_000392_510--Hb_009898_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.396462 19.772 0.470633 0.991222 0.273596 0.317536
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0849484 0.0267382 0.127526 0.148611 11.9734

CAGE analysis