Hb_000640_330

Information

Type -
Description -
Location Contig640: 311100-317243
Sequence    

Annotation

kegg
ID rcu:RCOM_1346300
description hypothetical protein
nr
ID XP_002515247.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RNA8
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1346300 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52144: 310827-311088 , PASA_asmbl_52145: 311102-311770 , PASA_asmbl_52146: 316524-317217
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000640_330 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000147_020 0.1073726845 - - PREDICTED: uncharacterized protein LOC105638303 [Jatropha curcas]
3 Hb_004724_180 0.1150590531 - - PREDICTED: protein FANTASTIC FOUR 1 [Jatropha curcas]
4 Hb_000042_090 0.1190907827 desease resistance Gene Name: NB-ARC Disease resistance protein RPS2, putative [Ricinus communis]
5 Hb_000776_020 0.1275669805 transcription factor TF Family: M-type hypothetical protein JCGZ_25594 [Jatropha curcas]
6 Hb_000500_360 0.1281550314 - - Xylem serine proteinase 1 precursor, putative [Ricinus communis]
7 Hb_000608_360 0.1282942602 - - calreticulin, putative [Ricinus communis]
8 Hb_006827_030 0.1290151813 - - oligopeptide transporter, putative [Ricinus communis]
9 Hb_031201_010 0.1299455998 - - PREDICTED: glycerophosphodiester phosphodiesterase protein kinase domain-containing GDPDL2-like isoform X2 [Jatropha curcas]
10 Hb_000049_170 0.1310651722 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001579_060 0.1315279881 - - carbonic anhydrase, putative [Ricinus communis]
12 Hb_001652_130 0.1340674295 - - hypothetical protein B456_002G193900 [Gossypium raimondii]
13 Hb_006970_120 0.13585538 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001883_010 0.1369727209 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1 [Jatropha curcas]
15 Hb_007205_020 0.1372488619 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Jatropha curcas]
16 Hb_000164_110 0.1397869873 transcription factor TF Family: C2H2 hypothetical protein POPTR_0001s44130g [Populus trichocarpa]
17 Hb_000694_050 0.139850536 - - Nuclease PA3, putative [Ricinus communis]
18 Hb_002615_080 0.1451668928 - - PREDICTED: non-specific phospholipase C2 [Jatropha curcas]
19 Hb_002845_020 0.1454836982 - - hypothetical protein POPTR_0012s14920g [Populus trichocarpa]
20 Hb_007035_010 0.1462106165 - - PREDICTED: synaptotagmin-4 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000640_330 Hb_000640_330 Hb_000147_020 Hb_000147_020 Hb_000640_330--Hb_000147_020 Hb_004724_180 Hb_004724_180 Hb_000640_330--Hb_004724_180 Hb_000042_090 Hb_000042_090 Hb_000640_330--Hb_000042_090 Hb_000776_020 Hb_000776_020 Hb_000640_330--Hb_000776_020 Hb_000500_360 Hb_000500_360 Hb_000640_330--Hb_000500_360 Hb_000608_360 Hb_000608_360 Hb_000640_330--Hb_000608_360 Hb_000147_020--Hb_000500_360 Hb_006970_120 Hb_006970_120 Hb_000147_020--Hb_006970_120 Hb_004324_320 Hb_004324_320 Hb_000147_020--Hb_004324_320 Hb_000260_750 Hb_000260_750 Hb_000147_020--Hb_000260_750 Hb_000380_140 Hb_000380_140 Hb_000147_020--Hb_000380_140 Hb_004724_180--Hb_000608_360 Hb_004724_180--Hb_000500_360 Hb_004724_180--Hb_000042_090 Hb_004724_180--Hb_000147_020 Hb_001172_150 Hb_001172_150 Hb_004724_180--Hb_001172_150 Hb_003915_020 Hb_003915_020 Hb_000042_090--Hb_003915_020 Hb_003119_130 Hb_003119_130 Hb_000042_090--Hb_003119_130 Hb_000164_110 Hb_000164_110 Hb_000042_090--Hb_000164_110 Hb_000042_090--Hb_000147_020 Hb_000694_050 Hb_000694_050 Hb_000042_090--Hb_000694_050 Hb_001301_010 Hb_001301_010 Hb_000776_020--Hb_001301_010 Hb_007850_110 Hb_007850_110 Hb_000776_020--Hb_007850_110 Hb_000416_010 Hb_000416_010 Hb_000776_020--Hb_000416_010 Hb_017098_050 Hb_017098_050 Hb_000776_020--Hb_017098_050 Hb_000442_170 Hb_000442_170 Hb_000776_020--Hb_000442_170 Hb_001109_130 Hb_001109_130 Hb_000776_020--Hb_001109_130 Hb_001501_020 Hb_001501_020 Hb_000500_360--Hb_001501_020 Hb_009102_010 Hb_009102_010 Hb_000500_360--Hb_009102_010 Hb_000049_170 Hb_000049_170 Hb_000500_360--Hb_000049_170 Hb_002845_020 Hb_002845_020 Hb_000500_360--Hb_002845_020 Hb_001285_020 Hb_001285_020 Hb_000500_360--Hb_001285_020 Hb_003141_060 Hb_003141_060 Hb_000608_360--Hb_003141_060 Hb_006277_080 Hb_006277_080 Hb_000608_360--Hb_006277_080 Hb_001300_160 Hb_001300_160 Hb_000608_360--Hb_001300_160 Hb_002276_030 Hb_002276_030 Hb_000608_360--Hb_002276_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0371774 4.56325 9.82138 4.00307 0.0155086 0.0290786
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.113348 0.208052 0.609989 7.23124 18.3892

CAGE analysis