Hb_000641_040

Information

Type -
Description -
Location Contig641: 43517-53392
Sequence    

Annotation

kegg
ID rcu:RCOM_0248620
description condensin, putative
nr
ID XP_012085999.1
description PREDICTED: condensin complex subunit 1 isoform X1 [Jatropha curcas]
swissprot
ID Q9YHY6
description Condensin complex subunit 1 OS=Xenopus laevis GN=ncapd2 PE=1 SV=1
trembl
ID A0A067K1Y1
description Condensin complex subunit 1 OS=Jatropha curcas GN=JCGZ_22491 PE=3 SV=1
Gene Ontology
ID GO:0005576
description condensin complex subunit 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52175: 44209-48713 , PASA_asmbl_52176: 43274-44924 , PASA_asmbl_52177: 48851-49391 , PASA_asmbl_52178: 49582-50465 , PASA_asmbl_52179: 51237-51485 , PASA_asmbl_52180: 51784-52004 , PASA_asmbl_52181: 52596-53444
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000641_040 0.0 - - PREDICTED: condensin complex subunit 1 isoform X1 [Jatropha curcas]
2 Hb_004116_080 0.1278019697 - - ATATH9, putative [Ricinus communis]
3 Hb_000046_260 0.1296637516 - - acyl carrier protein, putative [Ricinus communis]
4 Hb_007416_220 0.1448039847 - - PREDICTED: uncharacterized protein LOC105637482 [Jatropha curcas]
5 Hb_000144_110 0.1573830607 - - hypothetical protein CICLE_v10013189mg [Citrus clementina]
6 Hb_001097_020 0.1605523538 - - hypothetical protein POPTR_0011s00490g [Populus trichocarpa]
7 Hb_000188_130 0.1608947787 - - PREDICTED: uncharacterized protein LOC102628744 [Citrus sinensis]
8 Hb_005463_060 0.1646719347 - - PREDICTED: uncharacterized protein LOC105632515 [Jatropha curcas]
9 Hb_000948_210 0.1647829224 - - PREDICTED: iron-sulfur assembly protein IscA-like 2, mitochondrial [Jatropha curcas]
10 Hb_000297_230 0.1668152417 - - PREDICTED: probable small nuclear ribonucleoprotein G [Populus euphratica]
11 Hb_011609_180 0.1674852828 - - PREDICTED: uncharacterized protein DDB_G0275933-like [Citrus sinensis]
12 Hb_004958_050 0.1710578074 - - hypothetical protein CICLE_v10032980mg [Citrus clementina]
13 Hb_000384_130 0.1719936644 - - uridylate kinase plant, putative [Ricinus communis]
14 Hb_001341_130 0.172880651 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001045_080 0.1729861261 - - PREDICTED: uncharacterized protein LOC105646704 [Jatropha curcas]
16 Hb_000045_190 0.1739592029 - - PREDICTED: eukaryotic translation initiation factor 3 subunit F [Jatropha curcas]
17 Hb_000922_170 0.1747992727 - - PREDICTED: uncharacterized protein LOC105640383 [Jatropha curcas]
18 Hb_000085_200 0.1775212396 - - ATP synthase subunit H protein [Hevea brasiliensis]
19 Hb_002897_080 0.1785124214 - - hypothetical protein JCGZ_03306 [Jatropha curcas]
20 Hb_003018_120 0.1785500414 - - PREDICTED: probable small nuclear ribonucleoprotein F [Jatropha curcas]

Gene co-expression network

sample Hb_000641_040 Hb_000641_040 Hb_004116_080 Hb_004116_080 Hb_000641_040--Hb_004116_080 Hb_000046_260 Hb_000046_260 Hb_000641_040--Hb_000046_260 Hb_007416_220 Hb_007416_220 Hb_000641_040--Hb_007416_220 Hb_000144_110 Hb_000144_110 Hb_000641_040--Hb_000144_110 Hb_001097_020 Hb_001097_020 Hb_000641_040--Hb_001097_020 Hb_000188_130 Hb_000188_130 Hb_000641_040--Hb_000188_130 Hb_000045_190 Hb_000045_190 Hb_004116_080--Hb_000045_190 Hb_004116_080--Hb_000046_260 Hb_003018_120 Hb_003018_120 Hb_004116_080--Hb_003018_120 Hb_000798_030 Hb_000798_030 Hb_004116_080--Hb_000798_030 Hb_000160_130 Hb_000160_130 Hb_004116_080--Hb_000160_130 Hb_004116_080--Hb_000188_130 Hb_001045_080 Hb_001045_080 Hb_000046_260--Hb_001045_080 Hb_000312_090 Hb_000312_090 Hb_000046_260--Hb_000312_090 Hb_000046_260--Hb_000045_190 Hb_001687_040 Hb_001687_040 Hb_000046_260--Hb_001687_040 Hb_002214_050 Hb_002214_050 Hb_000046_260--Hb_002214_050 Hb_000085_200 Hb_000085_200 Hb_007416_220--Hb_000085_200 Hb_000922_170 Hb_000922_170 Hb_007416_220--Hb_000922_170 Hb_004958_050 Hb_004958_050 Hb_007416_220--Hb_004958_050 Hb_007416_220--Hb_000188_130 Hb_007416_220--Hb_000144_110 Hb_007416_220--Hb_000046_260 Hb_000815_270 Hb_000815_270 Hb_000144_110--Hb_000815_270 Hb_011609_180 Hb_011609_180 Hb_000144_110--Hb_011609_180 Hb_000144_110--Hb_001045_080 Hb_009851_100 Hb_009851_100 Hb_000144_110--Hb_009851_100 Hb_000025_600 Hb_000025_600 Hb_000144_110--Hb_000025_600 Hb_009252_130 Hb_009252_130 Hb_000144_110--Hb_009252_130 Hb_000805_130 Hb_000805_130 Hb_001097_020--Hb_000805_130 Hb_006925_040 Hb_006925_040 Hb_001097_020--Hb_006925_040 Hb_000948_210 Hb_000948_210 Hb_001097_020--Hb_000948_210 Hb_001634_040 Hb_001634_040 Hb_001097_020--Hb_001634_040 Hb_179296_010 Hb_179296_010 Hb_001097_020--Hb_179296_010 Hb_000699_160 Hb_000699_160 Hb_001097_020--Hb_000699_160 Hb_001341_130 Hb_001341_130 Hb_000188_130--Hb_001341_130 Hb_000188_130--Hb_000045_190 Hb_002759_230 Hb_002759_230 Hb_000188_130--Hb_002759_230 Hb_001153_080 Hb_001153_080 Hb_000188_130--Hb_001153_080 Hb_000188_130--Hb_001045_080 Hb_002529_100 Hb_002529_100 Hb_000188_130--Hb_002529_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.91886 0.114147 5.42691 2.3878 2.80241 5.44987
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.7705 17.8671 5.70817 0.897792 0.325324

CAGE analysis