Hb_000644_020

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig644: 49743-50543
Sequence    

Annotation

kegg
ID rcu:RCOM_0751360
description leucine-rich repeat containing protein, putative (EC:3.1.3.16)
nr
ID XP_012086128.1
description PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
swissprot
ID Q7XBQ9
description Disease resistance protein RGA2 OS=Solanum bulbocastanum GN=RGA2 PE=1 SV=1
trembl
ID A0A067JPZ0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21064 PE=4 SV=1
Gene Ontology
ID GO:0016787
description lrr and nb-arc domains-containing disease resistance

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52224: 50233-50552
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000644_020 0.0 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
2 Hb_170878_020 0.1050024581 - - -
3 Hb_032016_010 0.109197227 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At3g28040-like isoform X1 [Citrus sinensis]
4 Hb_000567_270 0.115254321 - - hypothetical protein L484_017162 [Morus notabilis]
5 Hb_040245_010 0.1154794727 - - hypothetical protein CISIN_1g039575mg, partial [Citrus sinensis]
6 Hb_006455_020 0.1201945087 - - Ent-kaurene synthase B, chloroplast precursor, putative [Ricinus communis]
7 Hb_003073_030 0.1224596265 - - conserved hypothetical protein [Ricinus communis]
8 Hb_009851_090 0.1247129358 - - Protein ABIL2, putative [Ricinus communis]
9 Hb_007533_050 0.1360151607 - - -
10 Hb_151870_010 0.1367331056 - - Metalloendoproteinase 1 precursor, putative [Ricinus communis]
11 Hb_005920_030 0.1380418666 - - putative polyprotein [Oryza sativa Japonica Group]
12 Hb_003311_020 0.1400877007 - - conserved hypothetical protein [Ricinus communis]
13 Hb_003462_170 0.142159219 - - unnamed protein product [Vitis vinifera]
14 Hb_000415_080 0.1440156082 - - -
15 Hb_002631_270 0.1443603758 transcription factor TF Family: MYB hypothetical protein POPTR_0005s09930g [Populus trichocarpa]
16 Hb_020831_070 0.145221808 - - hypothetical protein VITISV_027174 [Vitis vinifera]
17 Hb_001793_040 0.1522584061 - - hypothetical protein VITISV_006810 [Vitis vinifera]
18 Hb_008055_030 0.1562786158 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
19 Hb_014510_030 0.1578873151 - - hypothetical protein VITISV_027576 [Vitis vinifera]
20 Hb_077151_010 0.1603386679 - - ankyrin repeat protein [Bruguiera gymnorhiza]

Gene co-expression network

sample Hb_000644_020 Hb_000644_020 Hb_170878_020 Hb_170878_020 Hb_000644_020--Hb_170878_020 Hb_032016_010 Hb_032016_010 Hb_000644_020--Hb_032016_010 Hb_000567_270 Hb_000567_270 Hb_000644_020--Hb_000567_270 Hb_040245_010 Hb_040245_010 Hb_000644_020--Hb_040245_010 Hb_006455_020 Hb_006455_020 Hb_000644_020--Hb_006455_020 Hb_003073_030 Hb_003073_030 Hb_000644_020--Hb_003073_030 Hb_170878_020--Hb_040245_010 Hb_170878_020--Hb_006455_020 Hb_003462_170 Hb_003462_170 Hb_170878_020--Hb_003462_170 Hb_170878_020--Hb_003073_030 Hb_027654_010 Hb_027654_010 Hb_170878_020--Hb_027654_010 Hb_007533_050 Hb_007533_050 Hb_032016_010--Hb_007533_050 Hb_009851_090 Hb_009851_090 Hb_032016_010--Hb_009851_090 Hb_003311_020 Hb_003311_020 Hb_032016_010--Hb_003311_020 Hb_032016_010--Hb_003073_030 Hb_032016_010--Hb_040245_010 Hb_032016_010--Hb_000567_270 Hb_000567_270--Hb_003311_020 Hb_000567_270--Hb_007533_050 Hb_000567_270--Hb_009851_090 Hb_000567_270--Hb_006455_020 Hb_000415_080 Hb_000415_080 Hb_040245_010--Hb_000415_080 Hb_040245_010--Hb_003073_030 Hb_014510_030 Hb_014510_030 Hb_040245_010--Hb_014510_030 Hb_000199_090 Hb_000199_090 Hb_040245_010--Hb_000199_090 Hb_000627_110 Hb_000627_110 Hb_040245_010--Hb_000627_110 Hb_020831_070 Hb_020831_070 Hb_006455_020--Hb_020831_070 Hb_000476_030 Hb_000476_030 Hb_006455_020--Hb_000476_030 Hb_005678_030 Hb_005678_030 Hb_006455_020--Hb_005678_030 Hb_000522_030 Hb_000522_030 Hb_006455_020--Hb_000522_030 Hb_006455_020--Hb_007533_050 Hb_003073_030--Hb_014510_030 Hb_003073_030--Hb_000415_080 Hb_003073_030--Hb_000199_090 Hb_077151_010 Hb_077151_010 Hb_003073_030--Hb_077151_010 Hb_003073_030--Hb_000627_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.196942 0.407406 0.772676 0.0588151 0.035446
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.30796 6.06236

CAGE analysis