Hb_000645_140

Information

Type -
Description -
Location Contig645: 120528-123819
Sequence    

Annotation

kegg
ID vvi:100253286
description DNA-directed RNA polymerases II, IV and V subunit 9A
nr
ID XP_010268008.1
description PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 9A [Nelumbo nucifera]
swissprot
ID Q6NLH0
description DNA-directed RNA polymerases II, IV and V subunit 9A OS=Arabidopsis thaliana GN=NRPB9A PE=1 SV=1
trembl
ID A5AGZ7
description DNA-directed RNA polymerase subunit OS=Vitis vinifera GN=VIT_05s0077g01170 PE=3 SV=1
Gene Ontology
ID GO:0000419
description dna-directed rna polymerases iv and v subunit 9a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52263: 120644-123840 , PASA_asmbl_52265: 122414-122542
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000645_140 0.0 - - PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 9A [Nelumbo nucifera]
2 Hb_008948_050 0.0707533416 - - hypothetical protein JCGZ_13339 [Jatropha curcas]
3 Hb_000093_110 0.0714245941 - - PREDICTED: cytochrome b5 isoform A [Jatropha curcas]
4 Hb_002588_010 0.0785554979 - - PREDICTED: transcription factor BTF3 homolog 4-like [Malus domestica]
5 Hb_000062_390 0.0813147344 - - PREDICTED: protein Iojap-related, mitochondrial [Jatropha curcas]
6 Hb_000567_410 0.0888777149 - - hypothetical protein JCGZ_12784 [Jatropha curcas]
7 Hb_019516_100 0.0921670651 - - 40S ribosomal protein S14, putative [Ricinus communis]
8 Hb_002909_130 0.0930786851 - - Uncharacterized protein isoform 1 [Theobroma cacao]
9 Hb_116349_110 0.0950923376 - - PREDICTED: vacuolar protein sorting-associated protein 25 [Jatropha curcas]
10 Hb_002811_080 0.0957566521 - - hypothetical protein POPTR_0001s08090g [Populus trichocarpa]
11 Hb_000042_260 0.0963998346 - - PREDICTED: uncharacterized protein LOC105632814 [Jatropha curcas]
12 Hb_001634_040 0.0971313888 transcription factor TF Family: NF-YC DNA polymerase epsilon subunit, putative [Ricinus communis]
13 Hb_000330_070 0.0973685407 - - PREDICTED: proteasome subunit alpha type-1-B-like [Gossypium raimondii]
14 Hb_000111_100 0.0985432894 - - PREDICTED: NADPH:quinone oxidoreductase-like [Camelina sativa]
15 Hb_027472_160 0.0999884714 - - PREDICTED: proteasome subunit alpha type-2-A [Jatropha curcas]
16 Hb_000735_040 0.1019383784 - - 60S ribosomal protein L32A [Hevea brasiliensis]
17 Hb_001085_270 0.1030597873 - - 60S ribosomal protein L13aA [Hevea brasiliensis]
18 Hb_006478_160 0.1049771515 - - 20S proteasome beta subunit D1 [Hevea brasiliensis]
19 Hb_009880_010 0.1058156096 - - PREDICTED: cytochrome c [Jatropha curcas]
20 Hb_000193_120 0.1065006333 - - PREDICTED: protein preY, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_000645_140 Hb_000645_140 Hb_008948_050 Hb_008948_050 Hb_000645_140--Hb_008948_050 Hb_000093_110 Hb_000093_110 Hb_000645_140--Hb_000093_110 Hb_002588_010 Hb_002588_010 Hb_000645_140--Hb_002588_010 Hb_000062_390 Hb_000062_390 Hb_000645_140--Hb_000062_390 Hb_000567_410 Hb_000567_410 Hb_000645_140--Hb_000567_410 Hb_019516_100 Hb_019516_100 Hb_000645_140--Hb_019516_100 Hb_008948_050--Hb_002588_010 Hb_001386_050 Hb_001386_050 Hb_008948_050--Hb_001386_050 Hb_000042_260 Hb_000042_260 Hb_008948_050--Hb_000042_260 Hb_002909_130 Hb_002909_130 Hb_008948_050--Hb_002909_130 Hb_008948_050--Hb_019516_100 Hb_000735_040 Hb_000735_040 Hb_000093_110--Hb_000735_040 Hb_000093_110--Hb_002588_010 Hb_006478_160 Hb_006478_160 Hb_000093_110--Hb_006478_160 Hb_000093_110--Hb_000567_410 Hb_174865_010 Hb_174865_010 Hb_000093_110--Hb_174865_010 Hb_002588_010--Hb_000042_260 Hb_011311_010 Hb_011311_010 Hb_002588_010--Hb_011311_010 Hb_002588_010--Hb_019516_100 Hb_007944_040 Hb_007944_040 Hb_002588_010--Hb_007944_040 Hb_000111_340 Hb_000111_340 Hb_002588_010--Hb_000111_340 Hb_001634_040 Hb_001634_040 Hb_000062_390--Hb_001634_040 Hb_000062_390--Hb_002588_010 Hb_000062_390--Hb_019516_100 Hb_001155_040 Hb_001155_040 Hb_000062_390--Hb_001155_040 Hb_000062_390--Hb_000093_110 Hb_007304_070 Hb_007304_070 Hb_000062_390--Hb_007304_070 Hb_000567_410--Hb_006478_160 Hb_001085_270 Hb_001085_270 Hb_000567_410--Hb_001085_270 Hb_001085_120 Hb_001085_120 Hb_000567_410--Hb_001085_120 Hb_002811_080 Hb_002811_080 Hb_000567_410--Hb_002811_080 Hb_005063_050 Hb_005063_050 Hb_000567_410--Hb_005063_050 Hb_019516_100--Hb_000042_260 Hb_001158_230 Hb_001158_230 Hb_019516_100--Hb_001158_230 Hb_172221_010 Hb_172221_010 Hb_019516_100--Hb_172221_010 Hb_009384_020 Hb_009384_020 Hb_019516_100--Hb_009384_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.3768 7.22688 20.8029 11.8361 11.2804 9.7265
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
41.3308 103.387 33.6789 14.9028 12.0135

CAGE analysis