Hb_000645_150

Information

Type -
Description -
Location Contig645: 125605-127289
Sequence    

Annotation

kegg
ID rcu:RCOM_1000030
description zinc finger protein, putative
nr
ID XP_002519204.1
description zinc finger protein, putative [Ricinus communis]
swissprot
ID Q5EB97
description Zinc finger CCHC domain-containing protein 10 OS=Rattus norvegicus GN=Zcchc10 PE=2 SV=2
trembl
ID B9RZN5
description Zinc finger protein, putative OS=Ricinus communis GN=RCOM_1000030 PE=4 SV=1
Gene Ontology
ID GO:0003676
description zinc finger cchc domain-containing protein 10

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52266: 125137-127205 , PASA_asmbl_52267: 126782-126903
cDNA
(Sanger)
(ID:Location)		 026_L09.ab1: 126209-127205

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000645_150 0.0 - - zinc finger protein, putative [Ricinus communis]
2 Hb_000236_370 0.0491247108 - - PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1 [Jatropha curcas]
3 Hb_002097_090 0.0521662047 - - Splicing factor 3A subunit, putative [Ricinus communis]
4 Hb_006913_040 0.0614430324 - - PREDICTED: hydroxyacylglutathione hydrolase cytoplasmic [Jatropha curcas]
5 Hb_012305_070 0.0634843345 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000186_280 0.06349045 - - PREDICTED: uncharacterized protein At1g04910-like isoform X2 [Jatropha curcas]
7 Hb_001829_010 0.068388243 - - PREDICTED: general transcription factor 3C polypeptide 3-like isoform X2 [Jatropha curcas]
8 Hb_002400_180 0.0710483191 - - conserved hypothetical protein [Ricinus communis]
9 Hb_003581_120 0.0711876751 - - PREDICTED: uncharacterized protein LOC105649777 [Jatropha curcas]
10 Hb_002475_160 0.0733004303 - - PREDICTED: 60S ribosomal export protein NMD3 [Jatropha curcas]
11 Hb_000684_420 0.0736298132 transcription factor TF Family: C3H zinc finger protein, putative [Ricinus communis]
12 Hb_000803_300 0.0737793134 - - nuclear movement protein nudc, putative [Ricinus communis]
13 Hb_000879_140 0.073968994 - - PREDICTED: uncharacterized protein DDB_G0283697-like isoform X2 [Jatropha curcas]
14 Hb_000956_030 0.0746739614 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 19-like [Jatropha curcas]
15 Hb_009620_040 0.0748171152 - - PREDICTED: cyclin-T1-3-like [Jatropha curcas]
16 Hb_000236_320 0.0766403222 - - PREDICTED: ER membrane protein complex subunit 8/9 homolog [Jatropha curcas]
17 Hb_002820_040 0.0767287174 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000300_280 0.0768949408 - - PREDICTED: BTB/POZ and MATH domain-containing protein 4 isoform X1 [Jatropha curcas]
19 Hb_026099_010 0.0771079112 - - PREDICTED: E3 ubiquitin-protein ligase RHF2A isoform X2 [Jatropha curcas]
20 Hb_000076_080 0.077390179 - - PREDICTED: protein MOS2 [Jatropha curcas]

Gene co-expression network

sample Hb_000645_150 Hb_000645_150 Hb_000236_370 Hb_000236_370 Hb_000645_150--Hb_000236_370 Hb_002097_090 Hb_002097_090 Hb_000645_150--Hb_002097_090 Hb_006913_040 Hb_006913_040 Hb_000645_150--Hb_006913_040 Hb_012305_070 Hb_012305_070 Hb_000645_150--Hb_012305_070 Hb_000186_280 Hb_000186_280 Hb_000645_150--Hb_000186_280 Hb_001829_010 Hb_001829_010 Hb_000645_150--Hb_001829_010 Hb_000236_370--Hb_002097_090 Hb_028639_060 Hb_028639_060 Hb_000236_370--Hb_028639_060 Hb_000236_370--Hb_012305_070 Hb_000956_030 Hb_000956_030 Hb_000236_370--Hb_000956_030 Hb_000236_370--Hb_000186_280 Hb_000684_420 Hb_000684_420 Hb_002097_090--Hb_000684_420 Hb_004934_090 Hb_004934_090 Hb_002097_090--Hb_004934_090 Hb_000076_080 Hb_000076_080 Hb_002097_090--Hb_000076_080 Hb_009620_040 Hb_009620_040 Hb_002097_090--Hb_009620_040 Hb_000803_300 Hb_000803_300 Hb_002097_090--Hb_000803_300 Hb_006913_040--Hb_001829_010 Hb_001019_170 Hb_001019_170 Hb_006913_040--Hb_001019_170 Hb_002820_040 Hb_002820_040 Hb_006913_040--Hb_002820_040 Hb_006913_040--Hb_002097_090 Hb_000333_100 Hb_000333_100 Hb_006913_040--Hb_000333_100 Hb_012305_070--Hb_000684_420 Hb_012305_070--Hb_000186_280 Hb_001014_010 Hb_001014_010 Hb_012305_070--Hb_001014_010 Hb_003384_030 Hb_003384_030 Hb_012305_070--Hb_003384_030 Hb_000186_280--Hb_000684_420 Hb_001969_040 Hb_001969_040 Hb_000186_280--Hb_001969_040 Hb_002400_180 Hb_002400_180 Hb_000186_280--Hb_002400_180 Hb_000186_280--Hb_000076_080 Hb_001829_010--Hb_000684_420 Hb_001829_010--Hb_002097_090 Hb_001829_010--Hb_001019_170 Hb_001829_010--Hb_000076_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
84.7298 44.2084 18.5301 20.8003 90.2485 98.7005
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
63.9122 48.2963 29.4548 37.1121 14.302

CAGE analysis