Hb_000645_160

Information

Type -
Description -
Location Contig645: 129222-130992
Sequence    

Annotation

kegg
ID rcu:RCOM_1000020
description protein translocase, putative
nr
ID XP_002519203.1
description protein translocase, putative [Ricinus communis]
swissprot
ID Q0WMZ5
description Outer envelope pore protein 16-2, chloroplastic OS=Arabidopsis thaliana GN=OEP162 PE=2 SV=1
trembl
ID B9RZN4
description Protein translocase, putative OS=Ricinus communis GN=RCOM_1000020 PE=4 SV=1
Gene Ontology
ID GO:0031359
description outer envelope pore protein 16- chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52268: 130384-130980 , PASA_asmbl_52269: 131594-147839
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000645_160 0.0 - - protein translocase, putative [Ricinus communis]
2 Hb_000742_130 0.0790448811 - - PREDICTED: probable receptor-like protein kinase At1g30570 [Jatropha curcas]
3 Hb_032920_030 0.081060763 - - signal transducer, putative [Ricinus communis]
4 Hb_001936_180 0.0900838481 - - PREDICTED: protein NSP-INTERACTING KINASE 3 [Jatropha curcas]
5 Hb_000098_260 0.0903898937 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]
6 Hb_001138_070 0.0931865663 - - PREDICTED: D-3-phosphoglycerate dehydrogenase 1, chloroplastic-like [Jatropha curcas]
7 Hb_149055_010 0.0967966979 - - cinnamate 4-hydroxylase [Leucaena leucocephala]
8 Hb_001440_010 0.0979012484 - - PREDICTED: armadillo repeat-containing kinesin-like protein 1 [Populus euphratica]
9 Hb_009189_100 0.0987435186 - - PREDICTED: patellin-6 [Jatropha curcas]
10 Hb_001269_400 0.0987503324 - - cinnamoyl-CoA reductase [Hevea brasiliensis]
11 Hb_002641_140 0.1007287629 - - protein phosphatase 2c, putative [Ricinus communis]
12 Hb_001946_200 0.1009690591 - - PREDICTED: xylosyltransferase 1-like [Jatropha curcas]
13 Hb_000365_430 0.1010310376 - - PREDICTED: BTB/POZ domain-containing protein At3g08570-like [Jatropha curcas]
14 Hb_000329_720 0.1034278735 transcription factor TF Family: ERF hypothetical protein POPTR_0014s05500g [Populus trichocarpa]
15 Hb_029142_040 0.1095960414 - - replication factor C / DNA polymerase III gamma-tau subunit, putative [Ricinus communis]
16 Hb_002171_020 0.1118798947 - - protein phosphatase 2a, regulatory subunit, putative [Ricinus communis]
17 Hb_155444_010 0.1127583054 - - -
18 Hb_092975_010 0.1152427567 - - hypothetical protein JCGZ_04359 [Jatropha curcas]
19 Hb_000005_360 0.1170801841 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001493_140 0.1180297945 - - hypothetical protein PHAVU_010G123100g [Phaseolus vulgaris]

Gene co-expression network

sample Hb_000645_160 Hb_000645_160 Hb_000742_130 Hb_000742_130 Hb_000645_160--Hb_000742_130 Hb_032920_030 Hb_032920_030 Hb_000645_160--Hb_032920_030 Hb_001936_180 Hb_001936_180 Hb_000645_160--Hb_001936_180 Hb_000098_260 Hb_000098_260 Hb_000645_160--Hb_000098_260 Hb_001138_070 Hb_001138_070 Hb_000645_160--Hb_001138_070 Hb_149055_010 Hb_149055_010 Hb_000645_160--Hb_149055_010 Hb_002518_220 Hb_002518_220 Hb_000742_130--Hb_002518_220 Hb_000742_130--Hb_000098_260 Hb_006120_210 Hb_006120_210 Hb_000742_130--Hb_006120_210 Hb_092975_010 Hb_092975_010 Hb_000742_130--Hb_092975_010 Hb_000329_720 Hb_000329_720 Hb_000742_130--Hb_000329_720 Hb_001946_200 Hb_001946_200 Hb_032920_030--Hb_001946_200 Hb_001440_010 Hb_001440_010 Hb_032920_030--Hb_001440_010 Hb_032920_030--Hb_000742_130 Hb_032920_030--Hb_000098_260 Hb_032920_030--Hb_001936_180 Hb_022092_110 Hb_022092_110 Hb_001936_180--Hb_022092_110 Hb_000365_430 Hb_000365_430 Hb_001936_180--Hb_000365_430 Hb_001936_180--Hb_001440_010 Hb_001936_180--Hb_001946_200 Hb_000418_170 Hb_000418_170 Hb_001936_180--Hb_000418_170 Hb_000098_260--Hb_092975_010 Hb_002641_140 Hb_002641_140 Hb_000098_260--Hb_002641_140 Hb_000098_260--Hb_000365_430 Hb_000411_020 Hb_000411_020 Hb_000098_260--Hb_000411_020 Hb_001138_070--Hb_149055_010 Hb_008175_050 Hb_008175_050 Hb_001138_070--Hb_008175_050 Hb_003656_090 Hb_003656_090 Hb_001138_070--Hb_003656_090 Hb_000329_010 Hb_000329_010 Hb_001138_070--Hb_000329_010 Hb_001138_070--Hb_002641_140 Hb_001269_400 Hb_001269_400 Hb_149055_010--Hb_001269_400 Hb_149055_010--Hb_000329_010 Hb_002809_080 Hb_002809_080 Hb_149055_010--Hb_002809_080 Hb_000120_320 Hb_000120_320 Hb_149055_010--Hb_000120_320
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0632126 2.0727 3.87875 7.10654 0.0473003 0.0579244
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0578855 0.0910436 0 2.05602 2.40159

CAGE analysis