Hb_000645_180

Information

Type rubber biosynthesis
Description Gene Name: Dihydrolipoamide dehydrogenase
Location Contig645: 155603-161935
Sequence    

Annotation

kegg
ID rcu:RCOM_0999900
description dihydrolipoamide dehydrogenase, putative (EC:1.8.1.4)
nr
ID XP_007035752.1
description Lipoamide dehydrogenase 1 isoform 1 [Theobroma cacao]
swissprot
ID A8MS68
description Dihydrolipoyl dehydrogenase 1, chloroplastic OS=Arabidopsis thaliana GN=LPD1 PE=2 SV=1
trembl
ID A0A061EPX7
description Lipoamide dehydrogenase 1 isoform 1 OS=Theobroma cacao GN=TCM_021331 PE=3 SV=1
Gene Ontology
ID GO:0005623
description dihydrolipoyl dehydrogenase chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52272: 155609-161895
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000645_180 0.0 rubber biosynthesis Gene Name: Dihydrolipoamide dehydrogenase Lipoamide dehydrogenase 1 isoform 1 [Theobroma cacao]
2 Hb_068079_010 0.0746748231 - - -
3 Hb_022693_130 0.0762816658 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
4 Hb_012779_080 0.0765105139 - - PREDICTED: carbon catabolite repressor protein 4 homolog 3 isoform X3 [Jatropha curcas]
5 Hb_000108_020 0.0783307757 - - hypothetical protein POPTR_0019s02430g [Populus trichocarpa]
6 Hb_070624_010 0.0786866769 - - PREDICTED: reticulocalbin-2 [Jatropha curcas]
7 Hb_000320_190 0.0818969378 - - PREDICTED: aminomethyltransferase, mitochondrial [Jatropha curcas]
8 Hb_005665_090 0.0831025011 - - PREDICTED: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase isoform X2 [Jatropha curcas]
9 Hb_160271_010 0.0848646057 - - PREDICTED: FAD synthase-like isoform X2 [Jatropha curcas]
10 Hb_001623_490 0.0873563724 - - PREDICTED: haloacid dehalogenase-like hydrolase domain-containing protein At2g33255 isoform X2 [Jatropha curcas]
11 Hb_003058_100 0.0913477878 - - PREDICTED: hydroxymethylglutaryl-CoA lyase, mitochondrial [Jatropha curcas]
12 Hb_002828_060 0.0930192242 - - PREDICTED: probable phytol kinase 3, chloroplastic [Jatropha curcas]
13 Hb_006816_190 0.0945795468 - - calreticulin family protein [Populus trichocarpa]
14 Hb_000358_210 0.0955278142 - - oligosaccharyl transferase, putative [Ricinus communis]
15 Hb_000029_400 0.0972676895 - - PREDICTED: probable 1-acyl-sn-glycerol-3-phosphate acyltransferase 5 isoform X1 [Jatropha curcas]
16 Hb_000265_070 0.0976712091 - - glucose-1-phosphate denylyltransferase small subunit [Hevea brasiliensis]
17 Hb_009288_040 0.098251031 - - PREDICTED: uncharacterized protein LOC105648677 [Jatropha curcas]
18 Hb_010620_050 0.0994255619 - - PREDICTED: uncharacterized protein LOC105646119 [Jatropha curcas]
19 Hb_138585_030 0.0999538645 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 [Jatropha curcas]
20 Hb_029695_070 0.1003080348 - - PREDICTED: nudix hydrolase 10-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000645_180 Hb_000645_180 Hb_068079_010 Hb_068079_010 Hb_000645_180--Hb_068079_010 Hb_022693_130 Hb_022693_130 Hb_000645_180--Hb_022693_130 Hb_012779_080 Hb_012779_080 Hb_000645_180--Hb_012779_080 Hb_000108_020 Hb_000108_020 Hb_000645_180--Hb_000108_020 Hb_070624_010 Hb_070624_010 Hb_000645_180--Hb_070624_010 Hb_000320_190 Hb_000320_190 Hb_000645_180--Hb_000320_190 Hb_002828_060 Hb_002828_060 Hb_068079_010--Hb_002828_060 Hb_068079_010--Hb_000108_020 Hb_000862_100 Hb_000862_100 Hb_068079_010--Hb_000862_100 Hb_068079_010--Hb_022693_130 Hb_004705_160 Hb_004705_160 Hb_068079_010--Hb_004705_160 Hb_160271_010 Hb_160271_010 Hb_022693_130--Hb_160271_010 Hb_005062_060 Hb_005062_060 Hb_022693_130--Hb_005062_060 Hb_022693_130--Hb_000108_020 Hb_000107_250 Hb_000107_250 Hb_022693_130--Hb_000107_250 Hb_005665_090 Hb_005665_090 Hb_012779_080--Hb_005665_090 Hb_012779_080--Hb_000320_190 Hb_001623_490 Hb_001623_490 Hb_012779_080--Hb_001623_490 Hb_002915_010 Hb_002915_010 Hb_012779_080--Hb_002915_010 Hb_010620_050 Hb_010620_050 Hb_012779_080--Hb_010620_050 Hb_009288_040 Hb_009288_040 Hb_012779_080--Hb_009288_040 Hb_000085_070 Hb_000085_070 Hb_000108_020--Hb_000085_070 Hb_000108_020--Hb_160271_010 Hb_000480_040 Hb_000480_040 Hb_000108_020--Hb_000480_040 Hb_000926_060 Hb_000926_060 Hb_070624_010--Hb_000926_060 Hb_000358_210 Hb_000358_210 Hb_070624_010--Hb_000358_210 Hb_003680_220 Hb_003680_220 Hb_070624_010--Hb_003680_220 Hb_000265_070 Hb_000265_070 Hb_070624_010--Hb_000265_070 Hb_029695_070 Hb_029695_070 Hb_070624_010--Hb_029695_070 Hb_000320_190--Hb_160271_010 Hb_000320_190--Hb_002915_010 Hb_001396_020 Hb_001396_020 Hb_000320_190--Hb_001396_020 Hb_000320_190--Hb_005665_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.47818 7.35803 30.4546 20.5397 7.19382 8.84885
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.56547 4.43122 5.2546 11.0788 26.2825

CAGE analysis