Hb_000645_190

Information

Type -
Description -
Location Contig645: 162464-163088
Sequence    

Annotation

kegg
ID gmx:100777189
description 60S ribosomal protein L29-1-like
nr
ID XP_003529537.1
description PREDICTED: 60S ribosomal protein L29-1-like [Glycine max]
swissprot
ID Q9M7X7
description 60S ribosomal protein L29-1 OS=Arabidopsis thaliana GN=RPL29A PE=1 SV=1
trembl
ID A0A0B2PUR5
description 60S ribosomal protein L29-1 OS=Glycine soja GN=glysoja_004335 PE=4 SV=1
Gene Ontology
ID GO:0005840
description 60s ribosomal protein l29-1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52274: 162480-163265
cDNA
(Sanger)
(ID:Location)		 046_N23.ab1: 162996-163265 , 053_A06r.ab1: 163682-165723

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000645_190 0.0 - - PREDICTED: 60S ribosomal protein L29-1-like [Glycine max]
2 Hb_003549_020 0.0788520241 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001769_100 0.080981334 - - hypothetical protein POPTR_0014s01620g [Populus trichocarpa]
4 Hb_000085_330 0.0858752813 - - PREDICTED: 40S ribosomal protein S8 [Jatropha curcas]
5 Hb_000134_020 0.0883439316 - - thioredoxin-like family protein [Hevea brasiliensis]
6 Hb_000236_460 0.1003478257 - - PREDICTED: uncharacterized protein LOC105633119 isoform X1 [Jatropha curcas]
7 Hb_003058_220 0.1041996678 - - Pre-mRNA branch site protein p14, putative [Ricinus communis]
8 Hb_026398_010 0.1053267243 - - hypothetical protein B456_010G132100 [Gossypium raimondii]
9 Hb_002320_060 0.1054139084 - - hypothetical protein CARUB_v10018269mg, partial [Capsella rubella]
10 Hb_009384_020 0.1061299593 - - hypothetical protein JCGZ_24168 [Jatropha curcas]
11 Hb_097007_010 0.1076586854 - - hypothetical protein CARUB_v10018269mg, partial [Capsella rubella]
12 Hb_000419_130 0.1100662974 - - PREDICTED: uncharacterized protein LOC105650901 [Jatropha curcas]
13 Hb_003988_040 0.1107553259 - - PREDICTED: uncharacterized protein LOC105633684 [Jatropha curcas]
14 Hb_000163_130 0.113216306 - - hypothetical protein CICLE_v10022870mg [Citrus clementina]
15 Hb_002835_320 0.1141516761 - - 60S ribosomal protein L27B [Hevea brasiliensis]
16 Hb_000199_070 0.1152385654 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000028_400 0.1155515478 - - Protein SSU72, putative [Ricinus communis]
18 Hb_000449_040 0.1163013417 - - protein with unknown function [Ricinus communis]
19 Hb_001863_400 0.1163615588 - - hypothetical protein EUGRSUZ_F03302 [Eucalyptus grandis]
20 Hb_008847_020 0.1187547078 - - 40S ribosomal protein S17C [Hevea brasiliensis]

Gene co-expression network

sample Hb_000645_190 Hb_000645_190 Hb_003549_020 Hb_003549_020 Hb_000645_190--Hb_003549_020 Hb_001769_100 Hb_001769_100 Hb_000645_190--Hb_001769_100 Hb_000085_330 Hb_000085_330 Hb_000645_190--Hb_000085_330 Hb_000134_020 Hb_000134_020 Hb_000645_190--Hb_000134_020 Hb_000236_460 Hb_000236_460 Hb_000645_190--Hb_000236_460 Hb_003058_220 Hb_003058_220 Hb_000645_190--Hb_003058_220 Hb_003549_020--Hb_000236_460 Hb_097007_010 Hb_097007_010 Hb_003549_020--Hb_097007_010 Hb_002320_060 Hb_002320_060 Hb_003549_020--Hb_002320_060 Hb_004007_180 Hb_004007_180 Hb_003549_020--Hb_004007_180 Hb_007497_030 Hb_007497_030 Hb_003549_020--Hb_007497_030 Hb_000419_130 Hb_000419_130 Hb_001769_100--Hb_000419_130 Hb_012265_010 Hb_012265_010 Hb_001769_100--Hb_012265_010 Hb_003623_050 Hb_003623_050 Hb_001769_100--Hb_003623_050 Hb_011161_050 Hb_011161_050 Hb_001769_100--Hb_011161_050 Hb_001950_120 Hb_001950_120 Hb_001769_100--Hb_001950_120 Hb_000163_130 Hb_000163_130 Hb_000085_330--Hb_000163_130 Hb_002835_320 Hb_002835_320 Hb_000085_330--Hb_002835_320 Hb_148930_010 Hb_148930_010 Hb_000085_330--Hb_148930_010 Hb_001123_120 Hb_001123_120 Hb_000085_330--Hb_001123_120 Hb_183086_040 Hb_183086_040 Hb_000085_330--Hb_183086_040 Hb_011310_060 Hb_011310_060 Hb_000134_020--Hb_011310_060 Hb_003988_040 Hb_003988_040 Hb_000134_020--Hb_003988_040 Hb_002293_030 Hb_002293_030 Hb_000134_020--Hb_002293_030 Hb_000134_020--Hb_003058_220 Hb_003638_080 Hb_003638_080 Hb_000134_020--Hb_003638_080 Hb_187083_010 Hb_187083_010 Hb_000236_460--Hb_187083_010 Hb_021409_090 Hb_021409_090 Hb_000236_460--Hb_021409_090 Hb_000236_460--Hb_097007_010 Hb_000236_460--Hb_000085_330 Hb_000236_460--Hb_001123_120 Hb_000199_070 Hb_000199_070 Hb_003058_220--Hb_000199_070 Hb_005224_050 Hb_005224_050 Hb_003058_220--Hb_005224_050 Hb_002701_050 Hb_002701_050 Hb_003058_220--Hb_002701_050 Hb_003058_220--Hb_000419_130 Hb_001247_350 Hb_001247_350 Hb_003058_220--Hb_001247_350
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
233.36 94.1792 117.64 151.929 160.516 627.868
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
857.472 1611.39 388.266 216.926 127.378

CAGE analysis