Hb_000645_200

Information

Type -
Description -
Location Contig645: 163499-165878
Sequence    

Annotation

kegg
ID crb:CARUB_v10002026mg
description hypothetical protein
nr
ID XP_012084040.1
description PREDICTED: GTP-binding protein SAR1A [Jatropha curcas]
swissprot
ID O04834
description GTP-binding protein SAR1A OS=Arabidopsis thaliana GN=SAR1A PE=2 SV=1
trembl
ID A0A067JVH9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18972 PE=3 SV=1
Gene Ontology
ID GO:0005783
description gtp-binding protein sar1a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52275: 163504-165867 , PASA_asmbl_52276: 164558-164722
cDNA
(Sanger)
(ID:Location)		 053_A06.ab1: 163504-165622

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000645_200 0.0 - - PREDICTED: GTP-binding protein SAR1A [Jatropha curcas]
2 Hb_000012_240 0.1270250732 - - PREDICTED: ferrochelatase-2, chloroplastic [Jatropha curcas]
3 Hb_000529_280 0.1282171177 - - PREDICTED: CBS domain-containing protein CBSX1, chloroplastic [Jatropha curcas]
4 Hb_093458_010 0.128339669 - - hypothetical protein CISIN_1g0277592mg [Citrus sinensis]
5 Hb_001728_020 0.1293445956 - - PREDICTED: trans-1,2-dihydrobenzene-1,2-diol dehydrogenase [Jatropha curcas]
6 Hb_002450_030 0.1337351608 - - ATPP2-A13, putative [Ricinus communis]
7 Hb_027654_080 0.1404575346 - - PREDICTED: carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1-like isoform X1 [Jatropha curcas]
8 Hb_000023_310 0.140635697 - - PREDICTED: probable folate-biopterin transporter 2 [Populus euphratica]
9 Hb_007590_090 0.1416795326 - - PREDICTED: O-glucosyltransferase rumi [Jatropha curcas]
10 Hb_012807_130 0.1448470015 - - PREDICTED: lactoylglutathione lyase [Jatropha curcas]
11 Hb_000007_200 0.1482707654 - - PREDICTED: choline/ethanolaminephosphotransferase 1 [Jatropha curcas]
12 Hb_001817_100 0.1499448836 - - PREDICTED: deoxyhypusine hydroxylase [Jatropha curcas]
13 Hb_172632_050 0.1506831549 - - PREDICTED: uncharacterized protein LOC105646134 [Jatropha curcas]
14 Hb_018272_060 0.1526933917 - - PREDICTED: mavicyanin-like [Citrus sinensis]
15 Hb_003371_070 0.153228669 - - PREDICTED: citrate synthase, mitochondrial [Jatropha curcas]
16 Hb_000057_130 0.1542844144 - - PREDICTED: pyridoxal 5'-phosphate synthase-like subunit PDX1.2 [Jatropha curcas]
17 Hb_001998_200 0.1546647003 - - UDP-glucose 4-epimerase, putative [Ricinus communis]
18 Hb_002325_060 0.154689656 - - PREDICTED: ADP-ribosylation factor-like protein 8B-like [Glycine max]
19 Hb_002534_130 0.1559800505 - - membrane associated ring finger 1,8, putative [Ricinus communis]
20 Hb_000711_010 0.1563281898 transcription factor TF Family: Tify PREDICTED: protein TIFY 6B isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000645_200 Hb_000645_200 Hb_000012_240 Hb_000012_240 Hb_000645_200--Hb_000012_240 Hb_000529_280 Hb_000529_280 Hb_000645_200--Hb_000529_280 Hb_093458_010 Hb_093458_010 Hb_000645_200--Hb_093458_010 Hb_001728_020 Hb_001728_020 Hb_000645_200--Hb_001728_020 Hb_002450_030 Hb_002450_030 Hb_000645_200--Hb_002450_030 Hb_027654_080 Hb_027654_080 Hb_000645_200--Hb_027654_080 Hb_000711_010 Hb_000711_010 Hb_000012_240--Hb_000711_010 Hb_000666_010 Hb_000666_010 Hb_000012_240--Hb_000666_010 Hb_026198_010 Hb_026198_010 Hb_000012_240--Hb_026198_010 Hb_001956_060 Hb_001956_060 Hb_000012_240--Hb_001956_060 Hb_002349_030 Hb_002349_030 Hb_000012_240--Hb_002349_030 Hb_000704_030 Hb_000704_030 Hb_000012_240--Hb_000704_030 Hb_000529_280--Hb_001728_020 Hb_000723_230 Hb_000723_230 Hb_000529_280--Hb_000723_230 Hb_000139_470 Hb_000139_470 Hb_000529_280--Hb_000139_470 Hb_172632_050 Hb_172632_050 Hb_000529_280--Hb_172632_050 Hb_000529_280--Hb_093458_010 Hb_003602_060 Hb_003602_060 Hb_093458_010--Hb_003602_060 Hb_001767_060 Hb_001767_060 Hb_093458_010--Hb_001767_060 Hb_015807_160 Hb_015807_160 Hb_093458_010--Hb_015807_160 Hb_040819_010 Hb_040819_010 Hb_093458_010--Hb_040819_010 Hb_001863_070 Hb_001863_070 Hb_093458_010--Hb_001863_070 Hb_006060_020 Hb_006060_020 Hb_001728_020--Hb_006060_020 Hb_001728_020--Hb_026198_010 Hb_001728_020--Hb_172632_050 Hb_000732_190 Hb_000732_190 Hb_001728_020--Hb_000732_190 Hb_002686_150 Hb_002686_150 Hb_001728_020--Hb_002686_150 Hb_003849_190 Hb_003849_190 Hb_002450_030--Hb_003849_190 Hb_002217_500 Hb_002217_500 Hb_002450_030--Hb_002217_500 Hb_023344_110 Hb_023344_110 Hb_002450_030--Hb_023344_110 Hb_084849_010 Hb_084849_010 Hb_002450_030--Hb_084849_010 Hb_004218_120 Hb_004218_120 Hb_002450_030--Hb_004218_120 Hb_010891_020 Hb_010891_020 Hb_027654_080--Hb_010891_020 Hb_012340_060 Hb_012340_060 Hb_027654_080--Hb_012340_060 Hb_027654_080--Hb_000529_280 Hb_001616_110 Hb_001616_110 Hb_027654_080--Hb_001616_110 Hb_001277_050 Hb_001277_050 Hb_027654_080--Hb_001277_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.1662 31.9547 30.9172 50.1021 1.48441 3.0109
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.604 26.8392 14.0768 18.7366 17.9409

CAGE analysis