Hb_000645_250

Information

Type -
Description -
Location Contig645: 220196-226430
Sequence    

Annotation

kegg
ID rcu:RCOM_0999830
description Periplasmic beta-glucosidase precursor, putative (EC:3.2.1.21)
nr
ID XP_012084033.1
description PREDICTED: putative beta-D-xylosidase [Jatropha curcas]
swissprot
ID Q9FGY1
description Beta-D-xylosidase 1 OS=Arabidopsis thaliana GN=BXL1 PE=1 SV=1
trembl
ID A0A067JVH2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18967 PE=4 SV=1
Gene Ontology
ID GO:0009505
description beta-d-xylosidase family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52284: 220392-226403 , PASA_asmbl_52285: 223089-223233
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000645_250 0.0 - - PREDICTED: putative beta-D-xylosidase [Jatropha curcas]
2 Hb_000751_060 0.0713756558 - - PREDICTED: extensin-2-like, partial [Sesamum indicum]
3 Hb_000847_120 0.0848576022 - - hypothetical protein JCGZ_15115 [Jatropha curcas]
4 Hb_008376_020 0.0898863932 - - hypothetical protein JCGZ_03321 [Jatropha curcas]
5 Hb_060152_010 0.0971140233 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180 [Jatropha curcas]
6 Hb_000751_070 0.0984378534 - - -
7 Hb_000609_020 0.0991612504 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 [Jatropha curcas]
8 Hb_000000_200 0.1096859297 - - PREDICTED: protein TRANSPARENT TESTA 12 [Jatropha curcas]
9 Hb_168319_060 0.11641658 - - PREDICTED: cytochrome P450 CYP749A22-like [Populus euphratica]
10 Hb_032223_020 0.1220445641 - - ATP binding protein, putative [Ricinus communis]
11 Hb_146930_010 0.1223532728 - - -
12 Hb_000373_060 0.1245212331 - - PREDICTED: extensin-3 [Camelina sativa]
13 Hb_010334_050 0.1245376518 - - conserved hypothetical protein [Ricinus communis]
14 Hb_099157_010 0.1316729791 - - PREDICTED: uncharacterized protein LOC105630881 [Jatropha curcas]
15 Hb_006573_250 0.1352207568 - - PREDICTED: ABC transporter G family member 8 [Jatropha curcas]
16 Hb_015978_010 0.142048924 - - PREDICTED: probable beta-D-xylosidase 2 [Populus euphratica]
17 Hb_178703_010 0.1422639616 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
18 Hb_116190_010 0.1428718062 - - PREDICTED: uncharacterized protein LOC105118535 [Populus euphratica]
19 Hb_003861_090 0.1429767383 - - adenylsulfate kinase, putative [Ricinus communis]
20 Hb_003398_090 0.1437202883 - - PREDICTED: expansin-A4 [Jatropha curcas]

Gene co-expression network

sample Hb_000645_250 Hb_000645_250 Hb_000751_060 Hb_000751_060 Hb_000645_250--Hb_000751_060 Hb_000847_120 Hb_000847_120 Hb_000645_250--Hb_000847_120 Hb_008376_020 Hb_008376_020 Hb_000645_250--Hb_008376_020 Hb_060152_010 Hb_060152_010 Hb_000645_250--Hb_060152_010 Hb_000751_070 Hb_000751_070 Hb_000645_250--Hb_000751_070 Hb_000609_020 Hb_000609_020 Hb_000645_250--Hb_000609_020 Hb_000751_060--Hb_060152_010 Hb_000751_060--Hb_000751_070 Hb_168319_060 Hb_168319_060 Hb_000751_060--Hb_168319_060 Hb_146930_010 Hb_146930_010 Hb_000751_060--Hb_146930_010 Hb_000751_060--Hb_000847_120 Hb_000847_120--Hb_008376_020 Hb_000836_260 Hb_000836_260 Hb_000847_120--Hb_000836_260 Hb_000847_120--Hb_000609_020 Hb_000000_200 Hb_000000_200 Hb_000847_120--Hb_000000_200 Hb_000847_120--Hb_000751_070 Hb_008376_020--Hb_000609_020 Hb_001004_130 Hb_001004_130 Hb_008376_020--Hb_001004_130 Hb_008376_020--Hb_000000_200 Hb_006573_250 Hb_006573_250 Hb_008376_020--Hb_006573_250 Hb_060152_010--Hb_168319_060 Hb_060152_010--Hb_000751_070 Hb_001622_020 Hb_001622_020 Hb_060152_010--Hb_001622_020 Hb_000226_110 Hb_000226_110 Hb_060152_010--Hb_000226_110 Hb_000567_150 Hb_000567_150 Hb_000751_070--Hb_000567_150 Hb_000751_070--Hb_146930_010 Hb_001288_050 Hb_001288_050 Hb_000751_070--Hb_001288_050 Hb_000609_020--Hb_000000_200 Hb_010334_050 Hb_010334_050 Hb_000609_020--Hb_010334_050 Hb_099157_010 Hb_099157_010 Hb_000609_020--Hb_099157_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.322843 2.40585 4.11423 0 0.0181491
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0150648 0.0237096 0 9.36823 5.33337

CAGE analysis