Hb_000645_270

Information

Type -
Description -
Location Contig645: 232242-234279
Sequence    

Annotation

kegg
ID pop:POPTR_0008s10780g
description POPTRDRAFT_820579; hypothetical protein
nr
ID XP_011020466.1
description PREDICTED: uncharacterized protein LOC105122837 isoform X2 [Populus euphratica]
swissprot
ID -
description -
trembl
ID A0A067K6J1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18965 PE=4 SV=1
Gene Ontology
ID GO:0016829
description glycine-rich family isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52289: 232587-233443
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000645_270 0.0 - - PREDICTED: uncharacterized protein LOC105122837 isoform X2 [Populus euphratica]
2 Hb_031194_020 0.0460459502 - - BnaCnng13030D [Brassica napus]
3 Hb_003622_050 0.0582969886 - - PREDICTED: respiratory burst oxidase homolog protein A-like [Jatropha curcas]
4 Hb_007101_090 0.0746726397 - - PREDICTED: protein ALTERED XYLOGLUCAN 4 [Jatropha curcas]
5 Hb_003947_020 0.0761262397 - - Serine/threonine-protein kinase-transforming protein raf, putative [Ricinus communis]
6 Hb_052139_010 0.0765547432 - - PREDICTED: glucan endo-1,3-beta-glucosidase, basic isoform-like [Populus euphratica]
7 Hb_009095_020 0.0833595274 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1, partial [Populus euphratica]
8 Hb_001999_330 0.0841375283 - - hypothetical protein PRUPE_ppa022262mg, partial [Prunus persica]
9 Hb_000000_090 0.0857175596 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000844_060 0.0857946776 - - PREDICTED: uncharacterized protein LOC105633706 [Jatropha curcas]
11 Hb_183479_030 0.0883970609 - - Photosystem I reaction center subunit V, chloroplast precursor, putative [Ricinus communis]
12 Hb_026188_010 0.0922063432 - - PREDICTED: tropinone reductase homolog [Jatropha curcas]
13 Hb_001053_050 0.0923077218 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Vitis vinifera]
14 Hb_002600_110 0.0982514454 - - hypothetical protein POPTR_0004s10540g [Populus trichocarpa]
15 Hb_001856_290 0.1001756826 - - hypothetical protein JCGZ_16255 [Jatropha curcas]
16 Hb_005171_020 0.1047270065 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF5.7 [Jatropha curcas]
17 Hb_043327_010 0.1054746054 - - PREDICTED: uncharacterized protein LOC105785093, partial [Gossypium raimondii]
18 Hb_006272_010 0.1057357744 - - PREDICTED: cytochrome P450 86B1 [Vitis vinifera]
19 Hb_063885_010 0.1068212781 - - Xylem serine proteinase 1 precursor, putative [Ricinus communis]
20 Hb_001775_010 0.1086884041 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000645_270 Hb_000645_270 Hb_031194_020 Hb_031194_020 Hb_000645_270--Hb_031194_020 Hb_003622_050 Hb_003622_050 Hb_000645_270--Hb_003622_050 Hb_007101_090 Hb_007101_090 Hb_000645_270--Hb_007101_090 Hb_003947_020 Hb_003947_020 Hb_000645_270--Hb_003947_020 Hb_052139_010 Hb_052139_010 Hb_000645_270--Hb_052139_010 Hb_009095_020 Hb_009095_020 Hb_000645_270--Hb_009095_020 Hb_031194_020--Hb_003622_050 Hb_031194_020--Hb_052139_010 Hb_000000_090 Hb_000000_090 Hb_031194_020--Hb_000000_090 Hb_031194_020--Hb_007101_090 Hb_000844_060 Hb_000844_060 Hb_031194_020--Hb_000844_060 Hb_003622_050--Hb_000844_060 Hb_001080_290 Hb_001080_290 Hb_003622_050--Hb_001080_290 Hb_002600_110 Hb_002600_110 Hb_003622_050--Hb_002600_110 Hb_002188_150 Hb_002188_150 Hb_003622_050--Hb_002188_150 Hb_001001_130 Hb_001001_130 Hb_007101_090--Hb_001001_130 Hb_007101_090--Hb_052139_010 Hb_001856_290 Hb_001856_290 Hb_007101_090--Hb_001856_290 Hb_001999_330 Hb_001999_330 Hb_007101_090--Hb_001999_330 Hb_002010_010 Hb_002010_010 Hb_007101_090--Hb_002010_010 Hb_183479_030 Hb_183479_030 Hb_003947_020--Hb_183479_030 Hb_002997_060 Hb_002997_060 Hb_003947_020--Hb_002997_060 Hb_000696_200 Hb_000696_200 Hb_003947_020--Hb_000696_200 Hb_005171_020 Hb_005171_020 Hb_003947_020--Hb_005171_020 Hb_043327_010 Hb_043327_010 Hb_003947_020--Hb_043327_010 Hb_052139_010--Hb_001856_290 Hb_052139_010--Hb_001001_130 Hb_052139_010--Hb_000000_090 Hb_006331_010 Hb_006331_010 Hb_009095_020--Hb_006331_010 Hb_048694_010 Hb_048694_010 Hb_009095_020--Hb_048694_010 Hb_001081_070 Hb_001081_070 Hb_009095_020--Hb_001081_070 Hb_083242_040 Hb_083242_040 Hb_009095_020--Hb_083242_040 Hb_026188_010 Hb_026188_010 Hb_009095_020--Hb_026188_010 Hb_001715_050 Hb_001715_050 Hb_009095_020--Hb_001715_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.141256 3.56839 5.81436 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0429729 1.21035 54.035

CAGE analysis