Hb_000646_050

Information

Type -
Description -
Location Contig646: 157630-162168
Sequence    

Annotation

kegg
ID rcu:RCOM_0003510
description Ubiquitin carboxyl-terminal hydrolase, putative (EC:3.1.2.15)
nr
ID XP_012081166.1
description PREDICTED: ubiquitin carboxyl-terminal hydrolase 22-like [Jatropha curcas]
swissprot
ID Q9LEW0
description Ubiquitin carboxyl-terminal hydrolase 22 OS=Arabidopsis thaliana GN=UBP22 PE=2 SV=1
trembl
ID A0A067K5F6
description Ubiquitin carboxyl-terminal hydrolase OS=Jatropha curcas GN=JCGZ_17010 PE=3 SV=1
Gene Ontology
ID GO:0008234
description ubiquitin carboxyl-terminal hydrolase 22-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52337: 157421-162110 , PASA_asmbl_52338: 157909-160646 , PASA_asmbl_52339: 160022-160192
cDNA
(Sanger)
(ID:Location)		 006_B21.ab1: 161465-162107 , 026_P07.ab1: 161536-161937

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000646_050 0.0 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 22-like [Jatropha curcas]
2 Hb_001617_050 0.0737571921 - - PREDICTED: uncharacterized protein LOC105649351 isoform X1 [Jatropha curcas]
3 Hb_006938_080 0.0767087757 - - PREDICTED: U-box domain-containing protein 4 [Jatropha curcas]
4 Hb_005348_140 0.0783299767 - - PREDICTED: ubiquinone biosynthesis protein COQ9-B, mitochondrial [Jatropha curcas]
5 Hb_000003_250 0.0799939379 - - glycerol-3-phosphate dehydrogenase, putative [Ricinus communis]
6 Hb_065525_040 0.0844331729 transcription factor TF Family: ERF ethylene-responsive transcription factor 3-like [Jatropha curcas]
7 Hb_027380_130 0.0855953815 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 23 isoform X2 [Jatropha curcas]
8 Hb_012490_080 0.0869679145 - - threonine synthase, putative [Ricinus communis]
9 Hb_001014_030 0.0875371029 - - ATP binding protein, putative [Ricinus communis]
10 Hb_002809_050 0.087597524 - - PREDICTED: protein FIZZY-RELATED 2 [Jatropha curcas]
11 Hb_010128_080 0.0882622722 - - PREDICTED: pentatricopeptide repeat-containing protein At1g63330-like isoform X1 [Jatropha curcas]
12 Hb_006915_030 0.0896247598 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 8 [Jatropha curcas]
13 Hb_005463_100 0.0917747193 - - hypothetical protein POPTR_0001s08400g [Populus trichocarpa]
14 Hb_000395_190 0.0961583087 - - PREDICTED: F-box/LRR-repeat protein 7-like [Jatropha curcas]
15 Hb_004672_040 0.0970072733 - - PREDICTED: SEC1 family transport protein SLY1-like [Populus euphratica]
16 Hb_003976_030 0.0974469589 - - PREDICTED: probable phenylalanine--tRNA ligase beta subunit [Jatropha curcas]
17 Hb_022115_020 0.098784078 - - PREDICTED: glucan endo-1,3-beta-glucosidase 11 isoform X2 [Jatropha curcas]
18 Hb_007532_030 0.0988532443 - - PREDICTED: F-box/kelch-repeat protein At1g30090 [Jatropha curcas]
19 Hb_003371_090 0.0994872378 - - PREDICTED: uncharacterized protein LOC105650336 [Jatropha curcas]
20 Hb_001799_180 0.0995151059 - - PREDICTED: serine/threonine-protein kinase D6PK [Jatropha curcas]

Gene co-expression network

sample Hb_000646_050 Hb_000646_050 Hb_001617_050 Hb_001617_050 Hb_000646_050--Hb_001617_050 Hb_006938_080 Hb_006938_080 Hb_000646_050--Hb_006938_080 Hb_005348_140 Hb_005348_140 Hb_000646_050--Hb_005348_140 Hb_000003_250 Hb_000003_250 Hb_000646_050--Hb_000003_250 Hb_065525_040 Hb_065525_040 Hb_000646_050--Hb_065525_040 Hb_027380_130 Hb_027380_130 Hb_000646_050--Hb_027380_130 Hb_001617_050--Hb_005348_140 Hb_010128_080 Hb_010128_080 Hb_001617_050--Hb_010128_080 Hb_050622_050 Hb_050622_050 Hb_001617_050--Hb_050622_050 Hb_000538_270 Hb_000538_270 Hb_001617_050--Hb_000538_270 Hb_001226_040 Hb_001226_040 Hb_001617_050--Hb_001226_040 Hb_000245_040 Hb_000245_040 Hb_006938_080--Hb_000245_040 Hb_002809_050 Hb_002809_050 Hb_006938_080--Hb_002809_050 Hb_000866_170 Hb_000866_170 Hb_006938_080--Hb_000866_170 Hb_000107_490 Hb_000107_490 Hb_006938_080--Hb_000107_490 Hb_000395_190 Hb_000395_190 Hb_006938_080--Hb_000395_190 Hb_002105_040 Hb_002105_040 Hb_005348_140--Hb_002105_040 Hb_005348_140--Hb_001226_040 Hb_000175_460 Hb_000175_460 Hb_005348_140--Hb_000175_460 Hb_003862_050 Hb_003862_050 Hb_005348_140--Hb_003862_050 Hb_000512_060 Hb_000512_060 Hb_005348_140--Hb_000512_060 Hb_001014_030 Hb_001014_030 Hb_000003_250--Hb_001014_030 Hb_005463_100 Hb_005463_100 Hb_000003_250--Hb_005463_100 Hb_002046_180 Hb_002046_180 Hb_000003_250--Hb_002046_180 Hb_000003_250--Hb_010128_080 Hb_000876_070 Hb_000876_070 Hb_000003_250--Hb_000876_070 Hb_001799_210 Hb_001799_210 Hb_000003_250--Hb_001799_210 Hb_000732_010 Hb_000732_010 Hb_065525_040--Hb_000732_010 Hb_002754_010 Hb_002754_010 Hb_065525_040--Hb_002754_010 Hb_005054_110 Hb_005054_110 Hb_065525_040--Hb_005054_110 Hb_000331_550 Hb_000331_550 Hb_065525_040--Hb_000331_550 Hb_065525_040--Hb_005463_100 Hb_000069_310 Hb_000069_310 Hb_065525_040--Hb_000069_310 Hb_001300_150 Hb_001300_150 Hb_027380_130--Hb_001300_150 Hb_023344_120 Hb_023344_120 Hb_027380_130--Hb_023344_120 Hb_000676_250 Hb_000676_250 Hb_027380_130--Hb_000676_250 Hb_001159_130 Hb_001159_130 Hb_027380_130--Hb_001159_130 Hb_027380_130--Hb_065525_040 Hb_000703_350 Hb_000703_350 Hb_027380_130--Hb_000703_350
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.15622 5.03084 2.8269 5.41435 3.65762 3.9883
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.17723 4.19376 8.99201 3.99572 3.42727

CAGE analysis