Hb_000648_030

Information

Type -
Description -
Location Contig648: 62030-64945
Sequence    

Annotation

kegg
ID pvu:PHAVU_002G055100g
description hypothetical protein
nr
ID XP_007157250.1
description hypothetical protein PHAVU_002G055100g [Phaseolus vulgaris]
swissprot
ID P39101
description Protein CAJ1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CAJ1 PE=1 SV=1
trembl
ID K7K5P3
description Uncharacterized protein OS=Glycine max PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52416: 42641-65201
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000648_030 0.0 - - hypothetical protein PHAVU_002G055100g [Phaseolus vulgaris]
2 Hb_007317_060 0.0946574085 - - 60S ribosomal protein L10aB [Hevea brasiliensis]
3 Hb_067776_010 0.1065117664 - - mitochondrial 39S ribosomal protein L53 [Hevea brasiliensis]
4 Hb_000380_010 0.1068871249 - - PREDICTED: uncharacterized protein LOC105640155 isoform X3 [Jatropha curcas]
5 Hb_000493_010 0.1081496378 - - hypothetical protein CICLE_v10021431mg [Citrus clementina]
6 Hb_012675_070 0.1217410821 - - PREDICTED: cytoplasmic tRNA 2-thiolation protein 1 [Pyrus x bretschneideri]
7 Hb_002259_150 0.1266237679 - - BnaC04g40780D [Brassica napus]
8 Hb_000030_220 0.1267870592 - - PREDICTED: uncharacterized protein LOC105650405 [Jatropha curcas]
9 Hb_074979_020 0.1321382065 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
10 Hb_032927_010 0.1324649066 - - -
11 Hb_000003_730 0.1338398386 - - DNA repair/transcription protein met18/mms19, putative [Ricinus communis]
12 Hb_005400_030 0.1355702896 - - PREDICTED: LYR motif-containing protein At3g19508 [Jatropha curcas]
13 Hb_007012_020 0.1372327618 - - hypothetical protein POPTR_0005s11940g [Populus trichocarpa]
14 Hb_001504_080 0.1372356745 - - golgi snare 11 protein, putative [Ricinus communis]
15 Hb_006641_010 0.1374537043 - - PREDICTED: uncharacterized protein LOC104219776 [Nicotiana sylvestris]
16 Hb_042710_010 0.1382579331 - - PREDICTED: 40S ribosomal protein S15a-1 [Jatropha curcas]
17 Hb_180301_010 0.1411603524 - - PREDICTED: uncharacterized protein LOC105647918 isoform X1 [Jatropha curcas]
18 Hb_005117_010 0.1425403882 - - PREDICTED: hydroxymethylglutaryl-CoA lyase, mitochondrial-like [Jatropha curcas]
19 Hb_041205_010 0.1426902384 - - conserved hypothetical protein [Ricinus communis]
20 Hb_006502_080 0.1434519389 - - -

Gene co-expression network

sample Hb_000648_030 Hb_000648_030 Hb_007317_060 Hb_007317_060 Hb_000648_030--Hb_007317_060 Hb_067776_010 Hb_067776_010 Hb_000648_030--Hb_067776_010 Hb_000380_010 Hb_000380_010 Hb_000648_030--Hb_000380_010 Hb_000493_010 Hb_000493_010 Hb_000648_030--Hb_000493_010 Hb_012675_070 Hb_012675_070 Hb_000648_030--Hb_012675_070 Hb_002259_150 Hb_002259_150 Hb_000648_030--Hb_002259_150 Hb_007317_060--Hb_000380_010 Hb_007317_060--Hb_002259_150 Hb_008173_120 Hb_008173_120 Hb_007317_060--Hb_008173_120 Hb_000684_230 Hb_000684_230 Hb_007317_060--Hb_000684_230 Hb_003687_020 Hb_003687_020 Hb_007317_060--Hb_003687_020 Hb_000812_040 Hb_000812_040 Hb_067776_010--Hb_000812_040 Hb_032927_010 Hb_032927_010 Hb_067776_010--Hb_032927_010 Hb_007441_270 Hb_007441_270 Hb_067776_010--Hb_007441_270 Hb_067776_010--Hb_012675_070 Hb_000003_730 Hb_000003_730 Hb_067776_010--Hb_000003_730 Hb_000380_010--Hb_008173_120 Hb_005117_010 Hb_005117_010 Hb_000380_010--Hb_005117_010 Hb_015057_010 Hb_015057_010 Hb_000380_010--Hb_015057_010 Hb_009543_030 Hb_009543_030 Hb_000380_010--Hb_009543_030 Hb_007012_020 Hb_007012_020 Hb_000380_010--Hb_007012_020 Hb_042710_010 Hb_042710_010 Hb_000493_010--Hb_042710_010 Hb_001296_030 Hb_001296_030 Hb_000493_010--Hb_001296_030 Hb_000672_120 Hb_000672_120 Hb_000493_010--Hb_000672_120 Hb_000419_130 Hb_000419_130 Hb_000493_010--Hb_000419_130 Hb_000493_010--Hb_007317_060 Hb_005588_070 Hb_005588_070 Hb_012675_070--Hb_005588_070 Hb_002259_160 Hb_002259_160 Hb_012675_070--Hb_002259_160 Hb_000083_170 Hb_000083_170 Hb_012675_070--Hb_000083_170 Hb_003352_040 Hb_003352_040 Hb_012675_070--Hb_003352_040 Hb_037887_010 Hb_037887_010 Hb_012675_070--Hb_037887_010 Hb_005400_030 Hb_005400_030 Hb_012675_070--Hb_005400_030 Hb_002272_260 Hb_002272_260 Hb_002259_150--Hb_002272_260 Hb_102156_010 Hb_102156_010 Hb_002259_150--Hb_102156_010 Hb_100777_010 Hb_100777_010 Hb_002259_150--Hb_100777_010 Hb_004453_150 Hb_004453_150 Hb_002259_150--Hb_004453_150 Hb_000193_350 Hb_000193_350 Hb_002259_150--Hb_000193_350
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.67855 4.8428 4.56421 27.1136 13.6059 86.0671
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
44.7187 54.5878 35.2639 22.3673 9.81659

CAGE analysis