Hb_000648_060

Information

Type -
Description -
Location Contig648: 96422-99976
Sequence    

Annotation

kegg
ID pop:POPTR_0019s10570g
description POPTRDRAFT_826232; hypothetical protein
nr
ID XP_002325530.1
description hypothetical protein POPTR_0019s10570g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9IQD2
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0019s10570g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000648_060 0.0 - - hypothetical protein POPTR_0019s10570g [Populus trichocarpa]
2 Hb_002918_200 0.0718048358 - - -
3 Hb_000212_260 0.0736451289 - - acyl-carrier-protein [Triadica sebifera]
4 Hb_004108_230 0.0817735817 - - PREDICTED: 6.7 kDa chloroplast outer envelope membrane protein-like [Jatropha curcas]
5 Hb_003175_040 0.0839354607 - - PREDICTED: katanin p60 ATPase-containing subunit A1 isoform X1 [Jatropha curcas]
6 Hb_003927_130 0.085405539 - - PREDICTED: nudix hydrolase 9 [Phoenix dactylifera]
7 Hb_001538_110 0.085849684 - - PREDICTED: histone deacetylase 6, partial [Oryzias latipes]
8 Hb_000134_330 0.0894055797 - - PREDICTED: U6 snRNA-associated Sm-like protein LSm7 [Elaeis guineensis]
9 Hb_000883_050 0.0912473074 - - PREDICTED: 60S ribosomal protein L37a-like, partial [Solanum tuberosum]
10 Hb_000086_070 0.0937032919 - - Peptidase S24/S26A/S26B/S26C family protein isoform 1 [Theobroma cacao]
11 Hb_010672_070 0.0952131566 - - hypothetical protein ZEAMMB73_607937, partial [Zea mays]
12 Hb_000111_280 0.0957096998 - - diphosphoinositol polyphosphate phosphohydrolase, putative [Ricinus communis]
13 Hb_005590_020 0.0962078602 - - hypothetical protein CICLE_v10010008mg [Citrus clementina]
14 Hb_003376_130 0.096336948 transcription factor TF Family: S1Fa-like DNA-binding protein S1FA, putative [Ricinus communis]
15 Hb_011465_040 0.0964784248 - - PREDICTED: transcription and mRNA export factor SUS1 isoform X1 [Jatropha curcas]
16 Hb_005694_080 0.0965796578 - - DNA-directed RNA polymerase III, putative [Ricinus communis]
17 Hb_011609_180 0.0977520207 - - PREDICTED: uncharacterized protein DDB_G0275933-like [Citrus sinensis]
18 Hb_000051_040 0.098256135 - - PREDICTED: uncharacterized protein LOC102597788 [Solanum tuberosum]
19 Hb_004837_140 0.0988746558 - - hypothetical protein PRUPE_ppa012469mg [Prunus persica]
20 Hb_003376_030 0.0994103524 - - PREDICTED: ribonuclease P protein subunit p29 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000648_060 Hb_000648_060 Hb_002918_200 Hb_002918_200 Hb_000648_060--Hb_002918_200 Hb_000212_260 Hb_000212_260 Hb_000648_060--Hb_000212_260 Hb_004108_230 Hb_004108_230 Hb_000648_060--Hb_004108_230 Hb_003175_040 Hb_003175_040 Hb_000648_060--Hb_003175_040 Hb_003927_130 Hb_003927_130 Hb_000648_060--Hb_003927_130 Hb_001538_110 Hb_001538_110 Hb_000648_060--Hb_001538_110 Hb_004837_140 Hb_004837_140 Hb_002918_200--Hb_004837_140 Hb_002918_200--Hb_004108_230 Hb_000834_270 Hb_000834_270 Hb_002918_200--Hb_000834_270 Hb_002918_200--Hb_003175_040 Hb_000170_010 Hb_000170_010 Hb_002918_200--Hb_000170_010 Hb_002027_210 Hb_002027_210 Hb_002918_200--Hb_002027_210 Hb_003376_130 Hb_003376_130 Hb_000212_260--Hb_003376_130 Hb_000069_100 Hb_000069_100 Hb_000212_260--Hb_000069_100 Hb_001912_010 Hb_001912_010 Hb_000212_260--Hb_001912_010 Hb_010172_030 Hb_010172_030 Hb_000212_260--Hb_010172_030 Hb_009851_100 Hb_009851_100 Hb_000212_260--Hb_009851_100 Hb_000120_750 Hb_000120_750 Hb_004108_230--Hb_000120_750 Hb_004108_230--Hb_003175_040 Hb_004108_230--Hb_004837_140 Hb_011794_070 Hb_011794_070 Hb_004108_230--Hb_011794_070 Hb_044662_070 Hb_044662_070 Hb_004108_230--Hb_044662_070 Hb_003408_020 Hb_003408_020 Hb_003175_040--Hb_003408_020 Hb_003175_040--Hb_004837_140 Hb_001691_210 Hb_001691_210 Hb_003175_040--Hb_001691_210 Hb_002716_070 Hb_002716_070 Hb_003175_040--Hb_002716_070 Hb_001383_060 Hb_001383_060 Hb_003927_130--Hb_001383_060 Hb_000086_070 Hb_000086_070 Hb_003927_130--Hb_000086_070 Hb_001829_060 Hb_001829_060 Hb_003927_130--Hb_001829_060 Hb_001109_020 Hb_001109_020 Hb_003927_130--Hb_001109_020 Hb_001433_050 Hb_001433_050 Hb_003927_130--Hb_001433_050 Hb_000883_050 Hb_000883_050 Hb_003927_130--Hb_000883_050 Hb_089140_100 Hb_089140_100 Hb_001538_110--Hb_089140_100 Hb_001538_110--Hb_002918_200 Hb_001538_110--Hb_002716_070 Hb_001538_110--Hb_004837_140 Hb_000008_250 Hb_000008_250 Hb_001538_110--Hb_000008_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.3312 0.748696 3.88882 2.79775 8.05071 9.62024
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.222 22.955 15.6795 5.08614 2.88218

CAGE analysis