Hb_000648_080

Information

Type -
Description -
Location Contig648: 109724-117581
Sequence    

Annotation

kegg
ID tcc:TCM_041778
description Splicing factor PWI domain-containing protein, putative isoform 1
nr
ID XP_011035260.1
description PREDICTED: serine/arginine repetitive matrix protein 1 isoform X2 [Populus euphratica]
swissprot
ID Q5ZMJ9
description Serine/arginine repetitive matrix protein 1 OS=Gallus gallus GN=SRRM1 PE=2 SV=1
trembl
ID A0A061GXL7
description Splicing factor PWI domain-containing protein, putative isoform 2 OS=Theobroma cacao GN=TCM_041778 PE=4 SV=1
Gene Ontology
ID GO:0006397
description serine arginine repetitive matrix protein 1-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52424: 109846-116097
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000648_080 0.0 - - PREDICTED: serine/arginine repetitive matrix protein 1 isoform X2 [Populus euphratica]
2 Hb_000398_020 0.044790593 - - PREDICTED: superkiller viralicidic activity 2-like 2 isoform X1 [Jatropha curcas]
3 Hb_140049_040 0.0638954792 - - PREDICTED: uncharacterized protein LOC105632012 [Jatropha curcas]
4 Hb_000640_310 0.0649109056 - - hypothetical protein JCGZ_14055 [Jatropha curcas]
5 Hb_002890_120 0.0655938574 - - Nucleic acid binding,RNA binding isoform 1 [Theobroma cacao]
6 Hb_000406_230 0.0678618971 - - PREDICTED: probable nucleolar protein 5-1 [Jatropha curcas]
7 Hb_000264_030 0.0730363328 - - PREDICTED: splicing factor 3B subunit 2 [Jatropha curcas]
8 Hb_000289_040 0.0741688329 - - Poly(A) polymerase alpha, putative [Ricinus communis]
9 Hb_000236_400 0.0744334446 - - hypothetical protein JCGZ_01058 [Jatropha curcas]
10 Hb_004916_020 0.0744776879 - - PREDICTED: DNA ligase 4 [Jatropha curcas]
11 Hb_007558_070 0.0754362627 - - PREDICTED: pre-mRNA-processing factor 39 isoform X2 [Jatropha curcas]
12 Hb_000862_040 0.0773407717 - - ara4-interacting protein, putative [Ricinus communis]
13 Hb_004976_010 0.0773856177 - - hypothetical protein RCOM_1429110 [Ricinus communis]
14 Hb_002876_130 0.0779984707 - - PREDICTED: uncharacterized protein LOC105637143 [Jatropha curcas]
15 Hb_001799_050 0.080340087 - - PREDICTED: plasminogen activator inhibitor 1 RNA-binding protein [Vitis vinifera]
16 Hb_000768_180 0.0803410848 - - PREDICTED: uncharacterized protein LOC105632528 [Jatropha curcas]
17 Hb_000236_470 0.0808253568 - - PREDICTED: pentatricopeptide repeat-containing protein At5g55840 [Jatropha curcas]
18 Hb_001277_020 0.0815396466 - - PREDICTED: armadillo repeat-containing protein LFR [Jatropha curcas]
19 Hb_000170_150 0.0826198276 - - PREDICTED: uncharacterized protein LOC105638996 isoform X3 [Jatropha curcas]
20 Hb_012565_050 0.0838531723 - - PREDICTED: U1 small nuclear ribonucleoprotein 70 kDa [Jatropha curcas]

Gene co-expression network

sample Hb_000648_080 Hb_000648_080 Hb_000398_020 Hb_000398_020 Hb_000648_080--Hb_000398_020 Hb_140049_040 Hb_140049_040 Hb_000648_080--Hb_140049_040 Hb_000640_310 Hb_000640_310 Hb_000648_080--Hb_000640_310 Hb_002890_120 Hb_002890_120 Hb_000648_080--Hb_002890_120 Hb_000406_230 Hb_000406_230 Hb_000648_080--Hb_000406_230 Hb_000264_030 Hb_000264_030 Hb_000648_080--Hb_000264_030 Hb_007558_070 Hb_007558_070 Hb_000398_020--Hb_007558_070 Hb_000398_020--Hb_000406_230 Hb_002000_070 Hb_002000_070 Hb_000398_020--Hb_002000_070 Hb_000236_400 Hb_000236_400 Hb_000398_020--Hb_000236_400 Hb_004976_010 Hb_004976_010 Hb_000398_020--Hb_004976_010 Hb_000174_060 Hb_000174_060 Hb_140049_040--Hb_000174_060 Hb_000289_040 Hb_000289_040 Hb_140049_040--Hb_000289_040 Hb_001767_140 Hb_001767_140 Hb_140049_040--Hb_001767_140 Hb_002876_130 Hb_002876_130 Hb_140049_040--Hb_002876_130 Hb_000230_090 Hb_000230_090 Hb_140049_040--Hb_000230_090 Hb_001277_020 Hb_001277_020 Hb_140049_040--Hb_001277_020 Hb_001799_050 Hb_001799_050 Hb_000640_310--Hb_001799_050 Hb_000556_170 Hb_000556_170 Hb_000640_310--Hb_000556_170 Hb_000236_470 Hb_000236_470 Hb_000640_310--Hb_000236_470 Hb_000191_130 Hb_000191_130 Hb_000640_310--Hb_000191_130 Hb_000160_350 Hb_000160_350 Hb_000640_310--Hb_000160_350 Hb_023344_010 Hb_023344_010 Hb_000640_310--Hb_023344_010 Hb_008103_070 Hb_008103_070 Hb_002890_120--Hb_008103_070 Hb_002890_120--Hb_000236_400 Hb_032202_120 Hb_032202_120 Hb_002890_120--Hb_032202_120 Hb_002890_120--Hb_000398_020 Hb_000710_040 Hb_000710_040 Hb_002890_120--Hb_000710_040 Hb_000406_230--Hb_023344_010 Hb_000406_230--Hb_007558_070 Hb_000010_360 Hb_000010_360 Hb_000406_230--Hb_000010_360 Hb_000960_050 Hb_000960_050 Hb_000406_230--Hb_000960_050 Hb_000406_230--Hb_000191_130 Hb_000917_160 Hb_000917_160 Hb_000406_230--Hb_000917_160 Hb_000170_150 Hb_000170_150 Hb_000264_030--Hb_000170_150 Hb_003371_110 Hb_003371_110 Hb_000264_030--Hb_003371_110 Hb_000914_120 Hb_000914_120 Hb_000264_030--Hb_000914_120 Hb_000264_030--Hb_001799_050 Hb_000264_030--Hb_000289_040 Hb_000264_030--Hb_140049_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
24.9548 40.584 23.5026 19.063 32.6648 27.6136
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.8329 22.5092 8.70537 29.6027 20.7646

CAGE analysis