Hb_000649_010

Information

Type -
Description -
Location Contig649: 8065-11427
Sequence    

Annotation

kegg
ID cmo:103493451
description adagio protein 3
nr
ID XP_012072312.1
description PREDICTED: adagio protein 3 [Jatropha curcas]
swissprot
ID Q9C9W9
description Adagio protein 3 OS=Arabidopsis thaliana GN=ADO3 PE=1 SV=1
trembl
ID A0A067KPI3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04764 PE=4 SV=1
Gene Ontology
ID GO:0001047
description adagio protein 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52472: 7966-11445
cDNA
(Sanger)
(ID:Location)		 007_H24.ab1: 7966-8241

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000649_010 0.0 - - PREDICTED: adagio protein 3 [Jatropha curcas]
2 Hb_001989_020 0.132169286 - - hypothetical protein JCGZ_15521 [Jatropha curcas]
3 Hb_001301_230 0.1328029814 - - PREDICTED: uncharacterized protein LOC105632949 isoform X2 [Jatropha curcas]
4 Hb_000808_070 0.1375505342 - - PREDICTED: importin subunit alpha-2 [Jatropha curcas]
5 Hb_000932_070 0.1405578911 - - PREDICTED: asparagine synthetase [glutamine-hydrolyzing] 3 [Jatropha curcas]
6 Hb_003157_010 0.1424833419 - - PREDICTED: exocyst complex component EXO70A1 [Jatropha curcas]
7 Hb_004032_180 0.1445267883 - - PREDICTED: myosin heavy chain, non-muscle [Jatropha curcas]
8 Hb_000375_370 0.1458276133 - - Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplast precursor, putative [Ricinus communis]
9 Hb_000821_010 0.1511877133 - - PREDICTED: auxin response factor 19-like [Jatropha curcas]
10 Hb_124677_060 0.1531084109 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
11 Hb_001396_260 0.1548676162 - - PREDICTED: F-box only protein 6 [Jatropha curcas]
12 Hb_001900_110 0.1562860549 - - PREDICTED: replication protein A 70 kDa DNA-binding subunit E [Jatropha curcas]
13 Hb_000236_080 0.1619525821 - - PREDICTED: small subunit processome component 20 homolog [Jatropha curcas]
14 Hb_005375_040 0.162206305 - - dicer-1, putative [Ricinus communis]
15 Hb_000265_250 0.1640004137 - - auxilin, putative [Ricinus communis]
16 Hb_002477_150 0.1643038849 transcription factor TF Family: Alfin-like DNA binding protein, putative [Ricinus communis]
17 Hb_000264_100 0.1648944744 - - conserved hypothetical protein [Ricinus communis]
18 Hb_148209_020 0.1661444478 - - PREDICTED: SWI/SNF complex subunit SWI3D isoform X1 [Jatropha curcas]
19 Hb_003866_020 0.1664807816 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000997_030 0.1666457463 - - PREDICTED: MATH domain-containing protein At5g43560-like [Jatropha curcas]

Gene co-expression network

sample Hb_000649_010 Hb_000649_010 Hb_001989_020 Hb_001989_020 Hb_000649_010--Hb_001989_020 Hb_001301_230 Hb_001301_230 Hb_000649_010--Hb_001301_230 Hb_000808_070 Hb_000808_070 Hb_000649_010--Hb_000808_070 Hb_000932_070 Hb_000932_070 Hb_000649_010--Hb_000932_070 Hb_003157_010 Hb_003157_010 Hb_000649_010--Hb_003157_010 Hb_004032_180 Hb_004032_180 Hb_000649_010--Hb_004032_180 Hb_001989_020--Hb_003157_010 Hb_000032_310 Hb_000032_310 Hb_001989_020--Hb_000032_310 Hb_000023_060 Hb_000023_060 Hb_001989_020--Hb_000023_060 Hb_001396_260 Hb_001396_260 Hb_001989_020--Hb_001396_260 Hb_007101_180 Hb_007101_180 Hb_001989_020--Hb_007101_180 Hb_001301_230--Hb_000808_070 Hb_004899_070 Hb_004899_070 Hb_001301_230--Hb_004899_070 Hb_006501_020 Hb_006501_020 Hb_001301_230--Hb_006501_020 Hb_000265_250 Hb_000265_250 Hb_001301_230--Hb_000265_250 Hb_002477_150 Hb_002477_150 Hb_001301_230--Hb_002477_150 Hb_011465_030 Hb_011465_030 Hb_001301_230--Hb_011465_030 Hb_000808_070--Hb_003157_010 Hb_000808_070--Hb_006501_020 Hb_018133_030 Hb_018133_030 Hb_000808_070--Hb_018133_030 Hb_007257_050 Hb_007257_050 Hb_000808_070--Hb_007257_050 Hb_000808_070--Hb_000932_070 Hb_006683_040 Hb_006683_040 Hb_000932_070--Hb_006683_040 Hb_007894_130 Hb_007894_130 Hb_000932_070--Hb_007894_130 Hb_000340_110 Hb_000340_110 Hb_000932_070--Hb_000340_110 Hb_018301_010 Hb_018301_010 Hb_000932_070--Hb_018301_010 Hb_001511_110 Hb_001511_110 Hb_000932_070--Hb_001511_110 Hb_157966_010 Hb_157966_010 Hb_000932_070--Hb_157966_010 Hb_057451_010 Hb_057451_010 Hb_003157_010--Hb_057451_010 Hb_003157_010--Hb_006501_020 Hb_009028_030 Hb_009028_030 Hb_003157_010--Hb_009028_030 Hb_000640_200 Hb_000640_200 Hb_003157_010--Hb_000640_200 Hb_000865_080 Hb_000865_080 Hb_004032_180--Hb_000865_080 Hb_002163_010 Hb_002163_010 Hb_004032_180--Hb_002163_010 Hb_017075_030 Hb_017075_030 Hb_004032_180--Hb_017075_030 Hb_000034_160 Hb_000034_160 Hb_004032_180--Hb_000034_160 Hb_030565_090 Hb_030565_090 Hb_004032_180--Hb_030565_090 Hb_001454_320 Hb_001454_320 Hb_004032_180--Hb_001454_320
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.9068 35.0186 6.70599 3.083 14.2293 32.5473
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.1236 2.37826 6.79492 18.4974 2.98168

CAGE analysis