Hb_000649_060

Information

Type -
Description -
Location Contig649: 66420-70688
Sequence    

Annotation

kegg
ID tcc:TCM_011052
description Zinc finger isoform 2
nr
ID XP_012072307.1
description PREDICTED: E3 ubiquitin protein ligase RIE1 [Jatropha curcas]
swissprot
ID Q8GUU2
description E3 ubiquitin protein ligase RIE1 OS=Arabidopsis thaliana GN=RIE1 PE=2 SV=1
trembl
ID A0A067KPP8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04760 PE=4 SV=1
Gene Ontology
ID GO:0008270
description e3 ubiquitin protein ligase rie1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52479: 66424-70799 , PASA_asmbl_52480: 67823-68193
cDNA
(Sanger)
(ID:Location)		 016_F03.ab1: 66424-66665

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000649_060 0.0 - - PREDICTED: E3 ubiquitin protein ligase RIE1 [Jatropha curcas]
2 Hb_001587_030 0.0563427421 - - hypothetical protein JCGZ_09892 [Jatropha curcas]
3 Hb_001226_130 0.0649868351 - - PREDICTED: aminopeptidase M1-like [Jatropha curcas]
4 Hb_020805_180 0.069733858 - - PREDICTED: epidermal growth factor receptor substrate 15-like 1 [Jatropha curcas]
5 Hb_000890_070 0.0720477877 - - PREDICTED: protein ALWAYS EARLY 3 isoform X2 [Jatropha curcas]
6 Hb_004450_070 0.0742551963 - - PREDICTED: 2-hydroxyacyl-CoA lyase [Jatropha curcas]
7 Hb_000152_700 0.0757613965 - - PREDICTED: E3 ubiquitin protein ligase RIN2 [Jatropha curcas]
8 Hb_021297_020 0.0776016556 - - Cyclic nucleotide-gated ion channel, putative [Ricinus communis]
9 Hb_003340_010 0.0796920771 - - PREDICTED: ubiquitin-activating enzyme E1 1 [Vitis vinifera]
10 Hb_002851_010 0.0802296672 - - sugar transporter, putative [Ricinus communis]
11 Hb_001511_180 0.0814267088 - - Clathrin heavy chain 2 -like protein [Gossypium arboreum]
12 Hb_027445_020 0.0819437487 - - PREDICTED: glycosylphosphatidylinositol anchor attachment 1 protein [Jatropha curcas]
13 Hb_001369_360 0.0834367282 - - embryo yellow protein, partial [Manihot esculenta]
14 Hb_080147_050 0.086773073 - - PREDICTED: probable plastidic glucose transporter 2 [Jatropha curcas]
15 Hb_003280_020 0.0892944968 - - PREDICTED: enhancer of mRNA-decapping protein 4 isoform X1 [Jatropha curcas]
16 Hb_000321_090 0.0912694952 - - PREDICTED: calcium-transporting ATPase 1, endoplasmic reticulum-type-like [Jatropha curcas]
17 Hb_003994_220 0.0914530571 - - PREDICTED: V-type proton ATPase catalytic subunit A [Jatropha curcas]
18 Hb_004837_280 0.0916388066 - - PREDICTED: uncharacterized protein LOC105648296 [Jatropha curcas]
19 Hb_002027_190 0.0928386913 - - PREDICTED: autophagy-related protein 18g [Jatropha curcas]
20 Hb_055062_040 0.0932731851 - - ceramidase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000649_060 Hb_000649_060 Hb_001587_030 Hb_001587_030 Hb_000649_060--Hb_001587_030 Hb_001226_130 Hb_001226_130 Hb_000649_060--Hb_001226_130 Hb_020805_180 Hb_020805_180 Hb_000649_060--Hb_020805_180 Hb_000890_070 Hb_000890_070 Hb_000649_060--Hb_000890_070 Hb_004450_070 Hb_004450_070 Hb_000649_060--Hb_004450_070 Hb_000152_700 Hb_000152_700 Hb_000649_060--Hb_000152_700 Hb_001587_030--Hb_001226_130 Hb_065500_020 Hb_065500_020 Hb_001587_030--Hb_065500_020 Hb_060980_010 Hb_060980_010 Hb_001587_030--Hb_060980_010 Hb_004837_280 Hb_004837_280 Hb_001587_030--Hb_004837_280 Hb_001587_030--Hb_000890_070 Hb_001811_170 Hb_001811_170 Hb_001226_130--Hb_001811_170 Hb_000342_050 Hb_000342_050 Hb_001226_130--Hb_000342_050 Hb_001226_130--Hb_004837_280 Hb_001226_130--Hb_000152_700 Hb_080147_050 Hb_080147_050 Hb_020805_180--Hb_080147_050 Hb_000321_090 Hb_000321_090 Hb_020805_180--Hb_000321_090 Hb_002851_010 Hb_002851_010 Hb_020805_180--Hb_002851_010 Hb_000157_070 Hb_000157_070 Hb_020805_180--Hb_000157_070 Hb_002027_190 Hb_002027_190 Hb_020805_180--Hb_002027_190 Hb_002749_060 Hb_002749_060 Hb_000890_070--Hb_002749_060 Hb_000890_070--Hb_004450_070 Hb_004048_120 Hb_004048_120 Hb_000890_070--Hb_004048_120 Hb_003280_020 Hb_003280_020 Hb_000890_070--Hb_003280_020 Hb_003340_010 Hb_003340_010 Hb_000890_070--Hb_003340_010 Hb_002874_110 Hb_002874_110 Hb_000890_070--Hb_002874_110 Hb_019280_010 Hb_019280_010 Hb_004450_070--Hb_019280_010 Hb_004450_070--Hb_000152_700 Hb_001642_070 Hb_001642_070 Hb_004450_070--Hb_001642_070 Hb_004677_050 Hb_004677_050 Hb_004450_070--Hb_004677_050 Hb_000237_050 Hb_000237_050 Hb_004450_070--Hb_000237_050 Hb_000152_700--Hb_000342_050 Hb_001097_040 Hb_001097_040 Hb_000152_700--Hb_001097_040 Hb_000152_700--Hb_020805_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.28628 13.6176 11.7761 23.1775 9.84718 8.82468
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.83744 4.9063 9.62504 28.0141 21.3938

CAGE analysis