Hb_000649_070

Information

Type -
Description -
Location Contig649: 74667-79184
Sequence    

Annotation

kegg
ID rcu:RCOM_0598060
description UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase, putative
nr
ID XP_012072305.1
description PREDICTED: probable UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 2 [Jatropha curcas]
swissprot
ID F4IAW1
description Probable UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 5 OS=Arabidopsis thaliana GN=LPXC5 PE=2 SV=2
trembl
ID A0A067KPH8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04759 PE=4 SV=1
Gene Ontology
ID GO:0008759
description probable udp-3-o-

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52481: 74739-79249 , PASA_asmbl_52482: 74739-79249
cDNA
(Sanger)
(ID:Location)		 019_C15.ab1: 78578-79249 , 027_B16.ab1: 78347-79249

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000649_070 0.0 - - PREDICTED: probable UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 2 [Jatropha curcas]
2 Hb_006960_050 0.0553825187 - - PREDICTED: PRKR-interacting protein 1 [Jatropha curcas]
3 Hb_001329_130 0.0638336981 - - conserved hypothetical protein [Ricinus communis]
4 Hb_033153_070 0.0663383879 - - PREDICTED: uncharacterized protein LOC105649606 isoform X1 [Jatropha curcas]
5 Hb_079526_030 0.0686181332 - - PREDICTED: uncharacterized protein LOC105638120 [Jatropha curcas]
6 Hb_000334_270 0.072127835 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 [Jatropha curcas]
7 Hb_020367_050 0.0722146119 rubber biosynthesis Gene Name: Geranyl geranyl diphosphate synthase geranylgeranyl pyrophosphate synthase, putative [Ricinus communis]
8 Hb_007007_060 0.0737526562 - - PREDICTED: peroxisome biogenesis protein 16-like isoform X1 [Jatropha curcas]
9 Hb_000260_100 0.074881574 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000866_410 0.0760433364 - - hypothetical protein JCGZ_14422 [Jatropha curcas]
11 Hb_001586_040 0.0764241423 - - hypothetical protein JCGZ_17187 [Jatropha curcas]
12 Hb_000576_050 0.0772659607 - - Kinase superfamily protein [Theobroma cacao]
13 Hb_012753_170 0.0777780166 - - PREDICTED: phosphatidylinositol glycan anchor biosynthesis class U protein-like isoform X2 [Jatropha curcas]
14 Hb_000926_310 0.0781760953 - - uncharacterized protein LOC100500241 [Glycine max]
15 Hb_032208_040 0.0800949256 - - PREDICTED: serine/arginine-rich SC35-like splicing factor SCL33 [Populus euphratica]
16 Hb_000236_240 0.0806544624 - - Pre-mRNA-splicing factor cwc15, putative [Ricinus communis]
17 Hb_010068_040 0.0808151126 - - PREDICTED: uncharacterized protein LOC105632964 [Jatropha curcas]
18 Hb_003029_030 0.080961159 - - PREDICTED: uncharacterized protein LOC105642632 isoform X2 [Jatropha curcas]
19 Hb_033720_010 0.0814550171 - - PREDICTED: uncharacterized protein LOC105648843 [Jatropha curcas]
20 Hb_003849_060 0.0828527868 - - PREDICTED: pentatricopeptide repeat-containing protein At1g13040, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_000649_070 Hb_000649_070 Hb_006960_050 Hb_006960_050 Hb_000649_070--Hb_006960_050 Hb_001329_130 Hb_001329_130 Hb_000649_070--Hb_001329_130 Hb_033153_070 Hb_033153_070 Hb_000649_070--Hb_033153_070 Hb_079526_030 Hb_079526_030 Hb_000649_070--Hb_079526_030 Hb_000334_270 Hb_000334_270 Hb_000649_070--Hb_000334_270 Hb_020367_050 Hb_020367_050 Hb_000649_070--Hb_020367_050 Hb_004055_150 Hb_004055_150 Hb_006960_050--Hb_004055_150 Hb_004785_100 Hb_004785_100 Hb_006960_050--Hb_004785_100 Hb_006620_020 Hb_006620_020 Hb_006960_050--Hb_006620_020 Hb_006960_050--Hb_020367_050 Hb_002686_250 Hb_002686_250 Hb_006960_050--Hb_002686_250 Hb_000260_100 Hb_000260_100 Hb_001329_130--Hb_000260_100 Hb_001329_130--Hb_020367_050 Hb_000236_240 Hb_000236_240 Hb_001329_130--Hb_000236_240 Hb_005288_150 Hb_005288_150 Hb_001329_130--Hb_005288_150 Hb_001329_130--Hb_006960_050 Hb_010068_040 Hb_010068_040 Hb_033153_070--Hb_010068_040 Hb_033153_070--Hb_000334_270 Hb_033720_010 Hb_033720_010 Hb_033153_070--Hb_033720_010 Hb_002175_030 Hb_002175_030 Hb_033153_070--Hb_002175_030 Hb_000959_270 Hb_000959_270 Hb_033153_070--Hb_000959_270 Hb_001089_110 Hb_001089_110 Hb_079526_030--Hb_001089_110 Hb_000331_110 Hb_000331_110 Hb_079526_030--Hb_000331_110 Hb_001433_070 Hb_001433_070 Hb_079526_030--Hb_001433_070 Hb_003878_110 Hb_003878_110 Hb_079526_030--Hb_003878_110 Hb_001821_160 Hb_001821_160 Hb_079526_030--Hb_001821_160 Hb_000160_350 Hb_000160_350 Hb_079526_030--Hb_000160_350 Hb_000926_190 Hb_000926_190 Hb_000334_270--Hb_000926_190 Hb_000334_270--Hb_010068_040 Hb_003849_060 Hb_003849_060 Hb_000334_270--Hb_003849_060 Hb_006355_010 Hb_006355_010 Hb_000334_270--Hb_006355_010 Hb_000334_270--Hb_002175_030 Hb_032208_040 Hb_032208_040 Hb_020367_050--Hb_032208_040 Hb_020367_050--Hb_005288_150 Hb_000926_310 Hb_000926_310 Hb_020367_050--Hb_000926_310 Hb_007982_080 Hb_007982_080 Hb_020367_050--Hb_007982_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.4474 3.97302 5.30112 2.24491 6.51882 4.77804
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.81263 5.29782 2.46365 2.66741 3.32555

CAGE analysis