Hb_000649_110

Information

Type -
Description -
Location Contig649: 91380-98750
Sequence    

Annotation

kegg
ID rcu:RCOM_0598020
description hypothetical protein
nr
ID XP_012072302.1
description PREDICTED: protein VAC14 homolog [Jatropha curcas]
swissprot
ID Q9ZU97
description Protein VAC14 homolog OS=Arabidopsis thaliana GN=VAC14 PE=1 SV=2
trembl
ID A0A067L1Z3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04757 PE=4 SV=1
Gene Ontology
ID GO:0070772
description protein vac14 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52484: 91448-98728
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000649_110 0.0 - - PREDICTED: protein VAC14 homolog [Jatropha curcas]
2 Hb_001221_110 0.0639150971 transcription factor TF Family: SWI/SNF-BAF60b hypothetical protein JCGZ_11303 [Jatropha curcas]
3 Hb_000028_370 0.0723149102 - - Guanine nucleotide-binding protein alpha-2 subunit [Glycine soja]
4 Hb_002205_110 0.0732928392 - - conserved hypothetical protein [Ricinus communis]
5 Hb_008725_230 0.0744165933 - - PREDICTED: CTP synthase [Jatropha curcas]
6 Hb_001359_050 0.0771380273 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000886_050 0.0797534149 - - hypothetical protein POPTR_0003s01110g [Populus trichocarpa]
8 Hb_006922_010 0.0805175923 - - PREDICTED: F-box/kelch-repeat protein At3g23880-like [Jatropha curcas]
9 Hb_024958_010 0.0818646203 - - PREDICTED: LRR repeats and ubiquitin-like domain-containing protein At2g30105 [Jatropha curcas]
10 Hb_010997_080 0.0834891132 transcription factor TF Family: mTERF unnamed protein product [Vitis vinifera]
11 Hb_002232_410 0.0840309548 - - PREDICTED: L-galactose dehydrogenase [Jatropha curcas]
12 Hb_002900_090 0.0842915699 transcription factor TF Family: MYB PREDICTED: uncharacterized protein LOC105646817 [Jatropha curcas]
13 Hb_007765_110 0.0851175486 - - PREDICTED: zinc finger CCCH domain-containing protein 40-like [Jatropha curcas]
14 Hb_000062_070 0.0852584749 transcription factor TF Family: ARR-B two-component sensor histidine kinase bacteria, putative [Ricinus communis]
15 Hb_028285_010 0.0856341766 - - PREDICTED: F-box/FBD/LRR-repeat protein At1g13570-like [Jatropha curcas]
16 Hb_005116_060 0.0859417133 - - PREDICTED: mitochondrial Rho GTPase 2 isoform X1 [Jatropha curcas]
17 Hb_000357_110 0.0866588489 - - PREDICTED: uncharacterized protein LOC105643970 isoform X2 [Jatropha curcas]
18 Hb_001205_240 0.0882258877 - - PREDICTED: uncharacterized protein LOC105645528 [Jatropha curcas]
19 Hb_000484_130 0.0882673415 - - splicing factor, putative [Ricinus communis]
20 Hb_007811_050 0.0888159996 - - PREDICTED: probable serine/threonine-protein kinase NAK [Jatropha curcas]

Gene co-expression network

sample Hb_000649_110 Hb_000649_110 Hb_001221_110 Hb_001221_110 Hb_000649_110--Hb_001221_110 Hb_000028_370 Hb_000028_370 Hb_000649_110--Hb_000028_370 Hb_002205_110 Hb_002205_110 Hb_000649_110--Hb_002205_110 Hb_008725_230 Hb_008725_230 Hb_000649_110--Hb_008725_230 Hb_001359_050 Hb_001359_050 Hb_000649_110--Hb_001359_050 Hb_000886_050 Hb_000886_050 Hb_000649_110--Hb_000886_050 Hb_001221_110--Hb_001359_050 Hb_000484_130 Hb_000484_130 Hb_001221_110--Hb_000484_130 Hb_000173_280 Hb_000173_280 Hb_001221_110--Hb_000173_280 Hb_164390_010 Hb_164390_010 Hb_001221_110--Hb_164390_010 Hb_024958_010 Hb_024958_010 Hb_001221_110--Hb_024958_010 Hb_000028_370--Hb_002205_110 Hb_001205_240 Hb_001205_240 Hb_000028_370--Hb_001205_240 Hb_000028_370--Hb_008725_230 Hb_002232_410 Hb_002232_410 Hb_000028_370--Hb_002232_410 Hb_003761_010 Hb_003761_010 Hb_000028_370--Hb_003761_010 Hb_168978_010 Hb_168978_010 Hb_000028_370--Hb_168978_010 Hb_002205_110--Hb_001205_240 Hb_002205_110--Hb_002232_410 Hb_001408_040 Hb_001408_040 Hb_002205_110--Hb_001408_040 Hb_010997_080 Hb_010997_080 Hb_002205_110--Hb_010997_080 Hb_000441_140 Hb_000441_140 Hb_002205_110--Hb_000441_140 Hb_008725_230--Hb_002232_410 Hb_008725_230--Hb_001359_050 Hb_008725_230--Hb_001205_240 Hb_004324_130 Hb_004324_130 Hb_008725_230--Hb_004324_130 Hb_000185_030 Hb_000185_030 Hb_008725_230--Hb_000185_030 Hb_001359_050--Hb_024958_010 Hb_006570_080 Hb_006570_080 Hb_001359_050--Hb_006570_080 Hb_003464_090 Hb_003464_090 Hb_001359_050--Hb_003464_090 Hb_001359_050--Hb_000173_280 Hb_002078_220 Hb_002078_220 Hb_000886_050--Hb_002078_220 Hb_000861_080 Hb_000861_080 Hb_000886_050--Hb_000861_080 Hb_002890_290 Hb_002890_290 Hb_000886_050--Hb_002890_290 Hb_000886_050--Hb_003464_090 Hb_000076_160 Hb_000076_160 Hb_000886_050--Hb_000076_160 Hb_005653_090 Hb_005653_090 Hb_000886_050--Hb_005653_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.0286 30.7017 18.5446 19.6724 12.7495 20.5779
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
24.4233 23.5542 16.6172 23.3674 9.72838

CAGE analysis