Hb_000649_120

Information

Type -
Description -
Location Contig649: 138403-141676
Sequence    

Annotation

kegg
ID rcu:RCOM_0598000
description ankyrin repeat-containing protein, putative
nr
ID XP_002525995.1
description ankyrin repeat-containing protein, putative [Ricinus communis]
swissprot
ID Q9ZU96
description Ankyrin repeat-containing protein At2g01680 OS=Arabidopsis thaliana GN=At2g01680 PE=2 SV=1
trembl
ID B9SJ26
description Ankyrin repeat-containing protein, putative OS=Ricinus communis GN=RCOM_0598000 PE=4 SV=1
Gene Ontology
ID GO:0005886
description ankyrin repeat-containing protein at2g01680

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52485: 138908-141882 , PASA_asmbl_52486: 138468-141672
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000649_120 0.0 - - ankyrin repeat-containing protein, putative [Ricinus communis]
2 Hb_002235_310 0.0777008864 - - PREDICTED: KH domain-containing protein At4g18375 [Jatropha curcas]
3 Hb_000072_020 0.1005091394 - - PREDICTED: C2 and GRAM domain-containing protein At1g03370 isoform X2 [Jatropha curcas]
4 Hb_000866_110 0.1012783008 - - PREDICTED: uncharacterized protein LOC105642980 isoform X2 [Jatropha curcas]
5 Hb_000205_250 0.1127459354 - - PREDICTED: uncharacterized protein LOC105647762 [Jatropha curcas]
6 Hb_000080_110 0.113040155 - - PREDICTED: GPI ethanolamine phosphate transferase 3 isoform X1 [Jatropha curcas]
7 Hb_000000_120 0.1143431201 - - hypothetical protein EUGRSUZ_A004731, partial [Eucalyptus grandis]
8 Hb_002151_100 0.1150416083 - - PREDICTED: uncharacterized protein LOC105637951 [Jatropha curcas]
9 Hb_001900_100 0.1151214106 - - PREDICTED: uncharacterized protein LOC105632664 isoform X1 [Jatropha curcas]
10 Hb_011925_020 0.1151442848 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
11 Hb_006683_020 0.1166295606 - - PREDICTED: nucleosome assembly protein 1;4 [Jatropha curcas]
12 Hb_000056_280 0.1176151914 - - sur2 hydroxylase/desaturase, putative [Ricinus communis]
13 Hb_000805_190 0.1186509042 transcription factor TF Family: GRAS PREDICTED: uncharacterized protein LOC103323607 [Prunus mume]
14 Hb_003506_020 0.1197406725 - - PREDICTED: uncharacterized protein LOC105125881 isoform X1 [Populus euphratica]
15 Hb_005000_090 0.1201222233 - - PREDICTED: venom phosphodiesterase 2 [Jatropha curcas]
16 Hb_000599_360 0.1204401002 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
17 Hb_001366_270 0.1205587243 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase RPK2 [Jatropha curcas]
18 Hb_003470_050 0.1217351011 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
19 Hb_002686_140 0.1222419909 - - PREDICTED: general negative regulator of transcription subunit 3 isoform X1 [Jatropha curcas]
20 Hb_001511_180 0.1224692802 - - Clathrin heavy chain 2 -like protein [Gossypium arboreum]

Gene co-expression network

sample Hb_000649_120 Hb_000649_120 Hb_002235_310 Hb_002235_310 Hb_000649_120--Hb_002235_310 Hb_000072_020 Hb_000072_020 Hb_000649_120--Hb_000072_020 Hb_000866_110 Hb_000866_110 Hb_000649_120--Hb_000866_110 Hb_000205_250 Hb_000205_250 Hb_000649_120--Hb_000205_250 Hb_000080_110 Hb_000080_110 Hb_000649_120--Hb_000080_110 Hb_000000_120 Hb_000000_120 Hb_000649_120--Hb_000000_120 Hb_002235_310--Hb_000866_110 Hb_002235_310--Hb_000205_250 Hb_000125_180 Hb_000125_180 Hb_002235_310--Hb_000125_180 Hb_011925_020 Hb_011925_020 Hb_002235_310--Hb_011925_020 Hb_002235_310--Hb_000072_020 Hb_033363_010 Hb_033363_010 Hb_000072_020--Hb_033363_010 Hb_000227_320 Hb_000227_320 Hb_000072_020--Hb_000227_320 Hb_003964_110 Hb_003964_110 Hb_000072_020--Hb_003964_110 Hb_000805_190 Hb_000805_190 Hb_000072_020--Hb_000805_190 Hb_000133_090 Hb_000133_090 Hb_000072_020--Hb_000133_090 Hb_000866_110--Hb_000205_250 Hb_000866_110--Hb_000125_180 Hb_001006_010 Hb_001006_010 Hb_000866_110--Hb_001006_010 Hb_000866_110--Hb_011925_020 Hb_000271_120 Hb_000271_120 Hb_000866_110--Hb_000271_120 Hb_000205_250--Hb_000271_120 Hb_000205_250--Hb_011925_020 Hb_000205_250--Hb_000125_180 Hb_001956_060 Hb_001956_060 Hb_000205_250--Hb_001956_060 Hb_000321_090 Hb_000321_090 Hb_000080_110--Hb_000321_090 Hb_005074_020 Hb_005074_020 Hb_000080_110--Hb_005074_020 Hb_033799_010 Hb_033799_010 Hb_000080_110--Hb_033799_010 Hb_000049_250 Hb_000049_250 Hb_000080_110--Hb_000049_250 Hb_000080_110--Hb_011925_020 Hb_006478_030 Hb_006478_030 Hb_000080_110--Hb_006478_030 Hb_003506_020 Hb_003506_020 Hb_000000_120--Hb_003506_020 Hb_000220_080 Hb_000220_080 Hb_000000_120--Hb_000220_080 Hb_005970_010 Hb_005970_010 Hb_000000_120--Hb_005970_010 Hb_002072_010 Hb_002072_010 Hb_000000_120--Hb_002072_010 Hb_002316_170 Hb_002316_170 Hb_000000_120--Hb_002316_170 Hb_003125_180 Hb_003125_180 Hb_000000_120--Hb_003125_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.86978 25.7859 11.6788 27.821 4.30331 6.94389
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.90488 2.80364 9.85162 26.5438 14.896

CAGE analysis