Hb_000649_140

Information

Type transcription factor
Description TF Family: SET
Location Contig649: 147255-152118
Sequence    

Annotation

kegg
ID rcu:RCOM_0597980
description hypothetical protein
nr
ID XP_012072298.1
description PREDICTED: histone-lysine N-methyltransferase setd3 isoform X1 [Jatropha curcas]
swissprot
ID B0VX69
description Histone-lysine N-methyltransferase setd3 OS=Callithrix jacchus GN=SETD3 PE=3 SV=2
trembl
ID A0A067KPH2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04754 PE=4 SV=1
Gene Ontology
ID GO:0009507
description histone-lysine n-methyltransferase setd3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52488: 147441-152026
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000649_140 0.0 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase setd3 isoform X1 [Jatropha curcas]
2 Hb_003106_100 0.0695479307 - - mannose-1-phosphate guanyltransferase, putative [Ricinus communis]
3 Hb_002876_020 0.0862938007 - - PREDICTED: maf-like protein DDB_G0281937 isoform X2 [Jatropha curcas]
4 Hb_000700_040 0.0870640938 - - UDP-Glycosyltransferase superfamily protein isoform 4 [Theobroma cacao]
5 Hb_001307_030 0.0952159723 - - PREDICTED: succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial [Jatropha curcas]
6 Hb_011249_020 0.0986915176 - - PREDICTED: putative clathrin assembly protein At5g35200 [Jatropha curcas]
7 Hb_000428_060 0.0988306084 - - malate dehydrogenase, putative [Ricinus communis]
8 Hb_000465_070 0.0991732709 - - PREDICTED: 3-isopropylmalate dehydratase small subunit 3-like [Jatropha curcas]
9 Hb_008232_010 0.1007703046 transcription factor TF Family: C2C2-GATA GATA transcription factor, putative [Ricinus communis]
10 Hb_000035_480 0.1025551788 - - PREDICTED: probable protein phosphatase 2C 59 [Jatropha curcas]
11 Hb_000615_050 0.1043953288 - - Potassium transporter 11 family protein [Populus trichocarpa]
12 Hb_003291_020 0.1104531335 - - PREDICTED: ATP synthase subunit delta', mitochondrial [Jatropha curcas]
13 Hb_000212_290 0.1107379511 - - PREDICTED: protein TIC 20-II, chloroplastic [Jatropha curcas]
14 Hb_010560_050 0.1112711269 - - PREDICTED: acyl-protein thioesterase 1-like [Jatropha curcas]
15 Hb_006573_290 0.1114783058 - - PREDICTED: reticulon-like protein B5 [Jatropha curcas]
16 Hb_003126_070 0.1115376657 - - PREDICTED: 3-dehydroquinate synthase, chloroplastic [Jatropha curcas]
17 Hb_000457_290 0.1115507836 - - ATP-dependent Clp protease proteolytic subunit, putative [Ricinus communis]
18 Hb_001123_160 0.1134445877 rubber biosynthesis Gene Name: Pyruvate dehydrogenase PREDICTED: pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial isoform X2 [Jatropha curcas]
19 Hb_000403_070 0.1137928621 - - PREDICTED: iron-sulfur assembly protein IscA, chloroplastic isoform X1 [Jatropha curcas]
20 Hb_001353_010 0.1142573831 - - PREDICTED: cytochrome c oxidase assembly protein COX11, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_000649_140 Hb_000649_140 Hb_003106_100 Hb_003106_100 Hb_000649_140--Hb_003106_100 Hb_002876_020 Hb_002876_020 Hb_000649_140--Hb_002876_020 Hb_000700_040 Hb_000700_040 Hb_000649_140--Hb_000700_040 Hb_001307_030 Hb_001307_030 Hb_000649_140--Hb_001307_030 Hb_011249_020 Hb_011249_020 Hb_000649_140--Hb_011249_020 Hb_000428_060 Hb_000428_060 Hb_000649_140--Hb_000428_060 Hb_003106_100--Hb_002876_020 Hb_001019_150 Hb_001019_150 Hb_003106_100--Hb_001019_150 Hb_003106_100--Hb_000428_060 Hb_001353_010 Hb_001353_010 Hb_003106_100--Hb_001353_010 Hb_000465_070 Hb_000465_070 Hb_003106_100--Hb_000465_070 Hb_002876_020--Hb_001019_150 Hb_002876_020--Hb_000428_060 Hb_002876_020--Hb_001353_010 Hb_001242_080 Hb_001242_080 Hb_002876_020--Hb_001242_080 Hb_011344_190 Hb_011344_190 Hb_000700_040--Hb_011344_190 Hb_010560_050 Hb_010560_050 Hb_000700_040--Hb_010560_050 Hb_002631_010 Hb_002631_010 Hb_000700_040--Hb_002631_010 Hb_003376_250 Hb_003376_250 Hb_000700_040--Hb_003376_250 Hb_003126_070 Hb_003126_070 Hb_000700_040--Hb_003126_070 Hb_025098_010 Hb_025098_010 Hb_001307_030--Hb_025098_010 Hb_008566_030 Hb_008566_030 Hb_001307_030--Hb_008566_030 Hb_185255_010 Hb_185255_010 Hb_001307_030--Hb_185255_010 Hb_001307_030--Hb_011249_020 Hb_000297_120 Hb_000297_120 Hb_001307_030--Hb_000297_120 Hb_000329_210 Hb_000329_210 Hb_001307_030--Hb_000329_210 Hb_012244_010 Hb_012244_010 Hb_011249_020--Hb_012244_010 Hb_011249_020--Hb_000297_120 Hb_000240_030 Hb_000240_030 Hb_011249_020--Hb_000240_030 Hb_006683_070 Hb_006683_070 Hb_011249_020--Hb_006683_070 Hb_001123_160 Hb_001123_160 Hb_000428_060--Hb_001123_160 Hb_005276_040 Hb_005276_040 Hb_000428_060--Hb_005276_040 Hb_180343_010 Hb_180343_010 Hb_000428_060--Hb_180343_010 Hb_002045_060 Hb_002045_060 Hb_000428_060--Hb_002045_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.11249 1.7041 2.27363 5.92479 0.942673 1.9894
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.27582 6.71197 4.41196 4.59483 6.16602

CAGE analysis