Hb_000649_180

Information

Type -
Description -
Location Contig649: 199169-200710
Sequence    

Annotation

kegg
ID rcu:RCOM_0597840
description Desacetoxyvindoline 4-hydroxylase, putative (EC:1.14.11.20)
nr
ID XP_012072293.1
description PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase homolog 4-like [Jatropha curcas]
swissprot
ID Q94A78
description 1-aminocyclopropane-1-carboxylate oxidase homolog 4 OS=Arabidopsis thaliana GN=At1g03400 PE=2 SV=1
trembl
ID A0A067KPN4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04750 PE=3 SV=1
Gene Ontology
ID GO:0046872
description 1-aminocyclopropane-1-carboxylate oxidase homolog 4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52492: 199278-200605
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000649_180 0.0 - - PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase homolog 4-like [Jatropha curcas]
2 Hb_002291_020 0.1458579496 - - PREDICTED: glutamate synthase 1 [NADH], chloroplastic isoform X1 [Jatropha curcas]
3 Hb_002527_050 0.155735656 - - hypothetical protein JCGZ_20265 [Jatropha curcas]
4 Hb_149515_010 0.1568467677 - - multidrug resistance-associated protein 2, 6 (mrp2, 6), abc-transoprter, putative [Ricinus communis]
5 Hb_008033_060 0.1769944272 - - PREDICTED: uncharacterized protein LOC105637564 [Jatropha curcas]
6 Hb_000453_130 0.1853259948 - - PREDICTED: protein kinase 2A, chloroplastic-like [Jatropha curcas]
7 Hb_001754_260 0.1892472764 - - PREDICTED: uncharacterized protein LOC105643409 isoform X1 [Jatropha curcas]
8 Hb_000141_010 0.1919420653 - - PREDICTED: uncharacterized protein LOC105632253 [Jatropha curcas]
9 Hb_008145_010 0.1944602613 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
10 Hb_118157_020 0.1947511795 - - hypothetical protein MTR_3g456110 [Medicago truncatula]
11 Hb_006700_040 0.1974599736 - - PREDICTED: vacuolar-sorting receptor 6-like [Jatropha curcas]
12 Hb_000011_420 0.2094203919 - - PREDICTED: GDSL esterase/lipase At1g29660-like [Citrus sinensis]
13 Hb_000527_070 0.2099172983 transcription factor TF Family: SNF2 PREDICTED: uncharacterized protein LOC105649495 [Jatropha curcas]
14 Hb_152868_030 0.216505309 - - abhydrolase domain containing, putative [Ricinus communis]
15 Hb_011853_010 0.2198371168 - - PREDICTED: probable serine/threonine-protein kinase At1g18390 [Jatropha curcas]
16 Hb_007951_070 0.2200844208 desease resistance Gene Name: NB-ARC Disease resistance protein RFL1, putative [Ricinus communis]
17 Hb_000847_020 0.2210896707 - - PREDICTED: ras-related protein RABA5b [Jatropha curcas]
18 Hb_001096_020 0.2257190505 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like isoform X1 [Populus euphratica]
19 Hb_000816_020 0.232180211 desease resistance Gene Name: NB-ARC unnamed protein product [Coffea canephora]
20 Hb_012565_040 0.2326230339 - - PREDICTED: probable serine/threonine-protein kinase At1g18390 [Jatropha curcas]

Gene co-expression network

sample Hb_000649_180 Hb_000649_180 Hb_002291_020 Hb_002291_020 Hb_000649_180--Hb_002291_020 Hb_002527_050 Hb_002527_050 Hb_000649_180--Hb_002527_050 Hb_149515_010 Hb_149515_010 Hb_000649_180--Hb_149515_010 Hb_008033_060 Hb_008033_060 Hb_000649_180--Hb_008033_060 Hb_000453_130 Hb_000453_130 Hb_000649_180--Hb_000453_130 Hb_001754_260 Hb_001754_260 Hb_000649_180--Hb_001754_260 Hb_007919_040 Hb_007919_040 Hb_002291_020--Hb_007919_040 Hb_000141_010 Hb_000141_010 Hb_002291_020--Hb_000141_010 Hb_002291_020--Hb_149515_010 Hb_012565_040 Hb_012565_040 Hb_002291_020--Hb_012565_040 Hb_000527_070 Hb_000527_070 Hb_002291_020--Hb_000527_070 Hb_002527_050--Hb_012565_040 Hb_000011_420 Hb_000011_420 Hb_002527_050--Hb_000011_420 Hb_002170_020 Hb_002170_020 Hb_002527_050--Hb_002170_020 Hb_002527_050--Hb_002291_020 Hb_009193_100 Hb_009193_100 Hb_002527_050--Hb_009193_100 Hb_008145_010 Hb_008145_010 Hb_149515_010--Hb_008145_010 Hb_011909_010 Hb_011909_010 Hb_149515_010--Hb_011909_010 Hb_149515_010--Hb_007919_040 Hb_149515_010--Hb_000141_010 Hb_007951_070 Hb_007951_070 Hb_008033_060--Hb_007951_070 Hb_001096_020 Hb_001096_020 Hb_008033_060--Hb_001096_020 Hb_007237_010 Hb_007237_010 Hb_008033_060--Hb_007237_010 Hb_000445_030 Hb_000445_030 Hb_008033_060--Hb_000445_030 Hb_000692_110 Hb_000692_110 Hb_008033_060--Hb_000692_110 Hb_001014_150 Hb_001014_150 Hb_000453_130--Hb_001014_150 Hb_000847_020 Hb_000847_020 Hb_000453_130--Hb_000847_020 Hb_006538_010 Hb_006538_010 Hb_000453_130--Hb_006538_010 Hb_004800_220 Hb_004800_220 Hb_000453_130--Hb_004800_220 Hb_000453_130--Hb_008145_010 Hb_000453_130--Hb_000445_030 Hb_001754_260--Hb_007951_070 Hb_000027_100 Hb_000027_100 Hb_001754_260--Hb_000027_100 Hb_004920_110 Hb_004920_110 Hb_001754_260--Hb_004920_110 Hb_001754_260--Hb_000847_020 Hb_018616_040 Hb_018616_040 Hb_001754_260--Hb_018616_040 Hb_000094_120 Hb_000094_120 Hb_001754_260--Hb_000094_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.476028 17.5847 8.23561 8.81152 0.232987 0.457377
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.17446 1.14133 15.6697 28.1076 18.5754

CAGE analysis