Hb_000649_230

Information

Type -
Description -
Location Contig649: 254341-260145
Sequence    

Annotation

kegg
ID tcc:TCM_011026
description Mms zwei
nr
ID XP_012072292.1
description PREDICTED: ubiquitin-conjugating enzyme E2 variant 1A-like [Jatropha curcas]
swissprot
ID Q9CAB6
description Ubiquitin-conjugating enzyme E2 variant 1B OS=Arabidopsis thaliana GN=UEV1B PE=1 SV=1
trembl
ID A0A067KPG6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04749 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52494: 254516-258566 , PASA_asmbl_52495: 254629-260087 , PASA_asmbl_52496: 258573-260077
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000649_230 0.0 - - PREDICTED: ubiquitin-conjugating enzyme E2 variant 1A-like [Jatropha curcas]
2 Hb_000392_230 0.0595752838 - - conserved hypothetical protein [Ricinus communis]
3 Hb_010315_060 0.0698631734 - - PREDICTED: probable arabinosyltransferase ARAD1 [Jatropha curcas]
4 Hb_027428_010 0.0702489013 - - alpha-1,3-mannosyltransferase, putative [Ricinus communis]
5 Hb_073973_130 0.0707087078 - - PREDICTED: prolyl-tRNA synthetase associated domain-containing protein 1 [Jatropha curcas]
6 Hb_022132_050 0.071149377 - - GTP binding protein, putative [Ricinus communis]
7 Hb_003213_010 0.0730958962 - - PREDICTED: uncharacterized protein LOC105641815 [Jatropha curcas]
8 Hb_011618_050 0.0731445227 - - PREDICTED: uncharacterized protein LOC105634948 [Jatropha curcas]
9 Hb_002872_030 0.0753988579 - - PREDICTED: OTU domain-containing protein DDB_G0284757 [Jatropha curcas]
10 Hb_014720_120 0.0754209819 - - Phosphoenolpyruvate/phosphate translocator 1, chloroplastic -like protein [Gossypium arboreum]
11 Hb_000297_160 0.0778178334 - - PREDICTED: alpha/beta hydrolase domain-containing protein 11 [Jatropha curcas]
12 Hb_001012_010 0.0797944355 - - PREDICTED: XIAP-associated factor 1 [Jatropha curcas]
13 Hb_005588_030 0.0806923023 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 14 homolog [Eucalyptus grandis]
14 Hb_001357_350 0.0837581821 - - conserved hypothetical protein [Ricinus communis]
15 Hb_005144_090 0.0850198633 - - PREDICTED: vacuolar protein sorting-associated protein 24 homolog 1-like [Citrus sinensis]
16 Hb_006132_110 0.0850250429 - - conserved hypothetical protein [Ricinus communis]
17 Hb_002946_190 0.0853412309 - - PREDICTED: nudix hydrolase 26, chloroplastic [Jatropha curcas]
18 Hb_002311_180 0.0857549948 - - drought-responsive family protein [Populus trichocarpa]
19 Hb_002820_050 0.0858168836 - - PREDICTED: putative glutathione-specific gamma-glutamylcyclotransferase 2 [Jatropha curcas]
20 Hb_005271_220 0.0859696072 - - PREDICTED: general transcription factor IIE subunit 2-like [Jatropha curcas]

Gene co-expression network

sample Hb_000649_230 Hb_000649_230 Hb_000392_230 Hb_000392_230 Hb_000649_230--Hb_000392_230 Hb_010315_060 Hb_010315_060 Hb_000649_230--Hb_010315_060 Hb_027428_010 Hb_027428_010 Hb_000649_230--Hb_027428_010 Hb_073973_130 Hb_073973_130 Hb_000649_230--Hb_073973_130 Hb_022132_050 Hb_022132_050 Hb_000649_230--Hb_022132_050 Hb_003213_010 Hb_003213_010 Hb_000649_230--Hb_003213_010 Hb_000392_230--Hb_010315_060 Hb_000751_030 Hb_000751_030 Hb_000392_230--Hb_000751_030 Hb_000392_230--Hb_022132_050 Hb_001195_260 Hb_001195_260 Hb_000392_230--Hb_001195_260 Hb_000392_230--Hb_073973_130 Hb_010315_060--Hb_001195_260 Hb_058972_010 Hb_058972_010 Hb_010315_060--Hb_058972_010 Hb_004122_040 Hb_004122_040 Hb_010315_060--Hb_004122_040 Hb_010315_060--Hb_022132_050 Hb_002872_030 Hb_002872_030 Hb_027428_010--Hb_002872_030 Hb_027428_010--Hb_073973_130 Hb_005337_090 Hb_005337_090 Hb_027428_010--Hb_005337_090 Hb_006588_070 Hb_006588_070 Hb_027428_010--Hb_006588_070 Hb_000185_070 Hb_000185_070 Hb_027428_010--Hb_000185_070 Hb_010381_090 Hb_010381_090 Hb_027428_010--Hb_010381_090 Hb_000107_190 Hb_000107_190 Hb_073973_130--Hb_000107_190 Hb_073973_130--Hb_002872_030 Hb_073973_130--Hb_022132_050 Hb_073973_130--Hb_005337_090 Hb_000610_010 Hb_000610_010 Hb_073973_130--Hb_000610_010 Hb_022132_050--Hb_002872_030 Hb_022132_050--Hb_006588_070 Hb_022132_050--Hb_027428_010 Hb_000173_310 Hb_000173_310 Hb_003213_010--Hb_000173_310 Hb_001723_150 Hb_001723_150 Hb_003213_010--Hb_001723_150 Hb_000300_260 Hb_000300_260 Hb_003213_010--Hb_000300_260 Hb_004312_010 Hb_004312_010 Hb_003213_010--Hb_004312_010 Hb_002272_050 Hb_002272_050 Hb_003213_010--Hb_002272_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
34.8963 18.8911 47.2298 31.559 29.5824 28.4296
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
32.3557 37.1468 23.2975 18.391 17.9528

CAGE analysis