Hb_000649_240

Information

Type -
Description -
Location Contig649: 261669-264238
Sequence    

Annotation

kegg
ID pop:POPTR_0010s11820g
description POPTRDRAFT_726819; calcium binding family protein
nr
ID XP_012072291.1
description PREDICTED: probable peroxygenase 4 [Jatropha curcas]
swissprot
ID Q9CAB7
description Probable peroxygenase 4 OS=Arabidopsis thaliana GN=PXG4 PE=1 SV=1
trembl
ID A0A067L0U1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04748 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000649_240 0.0 - - PREDICTED: probable peroxygenase 4 [Jatropha curcas]
2 Hb_021888_050 0.1471945314 - - PREDICTED: putative CCR4-associated factor 1 homolog 8 [Jatropha curcas]
3 Hb_000432_040 0.1518490252 - - PREDICTED: remorin-like [Jatropha curcas]
4 Hb_028487_020 0.1541297195 - - hypothetical protein POPTR_0010s11880g [Populus trichocarpa]
5 Hb_002097_200 0.1544476553 - - protein phosphatase 2a, regulatory subunit, putative [Ricinus communis]
6 Hb_006788_140 0.1546795207 - - PREDICTED: uncharacterized protein LOC105649915 [Jatropha curcas]
7 Hb_000451_070 0.155058543 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
8 Hb_000732_250 0.1608658261 - - PREDICTED: external alternative NAD(P)H-ubiquinone oxidoreductase B2, mitochondrial-like [Populus euphratica]
9 Hb_000987_060 0.1626172337 - - PREDICTED: BRCA1-A complex subunit Abraxas [Jatropha curcas]
10 Hb_088753_010 0.1638345189 - - PREDICTED: copper amine oxidase 1-like [Vitis vinifera]
11 Hb_001902_190 0.1642205063 - - PREDICTED: oxalate--CoA ligase [Jatropha curcas]
12 Hb_034688_020 0.1656451958 - - PREDICTED: uncharacterized protein LOC105642050 [Jatropha curcas]
13 Hb_008173_030 0.1698618228 - - PREDICTED: glutathione S-transferase T1-like [Jatropha curcas]
14 Hb_002042_130 0.1702573481 transcription factor TF Family: NF-YC PREDICTED: nuclear transcription factor Y subunit C-3 [Jatropha curcas]
15 Hb_000345_200 0.1703301999 - - PREDICTED: uncharacterized protein LOC105647522 [Jatropha curcas]
16 Hb_000402_210 0.1754017844 - - hypothetical protein EUGRSUZ_B032971, partial [Eucalyptus grandis]
17 Hb_126380_010 0.1766256427 desease resistance Gene Name: NB-ARC ATP binding protein, putative [Ricinus communis]
18 Hb_001433_140 0.1779900173 - - PREDICTED: phospholipase D p1 [Jatropha curcas]
19 Hb_024682_020 0.1789911479 - - hypothetical protein POPTR_0001s12710g [Populus trichocarpa]
20 Hb_000517_040 0.1805473381 - - PREDICTED: protein argonaute 16 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000649_240 Hb_000649_240 Hb_021888_050 Hb_021888_050 Hb_000649_240--Hb_021888_050 Hb_000432_040 Hb_000432_040 Hb_000649_240--Hb_000432_040 Hb_028487_020 Hb_028487_020 Hb_000649_240--Hb_028487_020 Hb_002097_200 Hb_002097_200 Hb_000649_240--Hb_002097_200 Hb_006788_140 Hb_006788_140 Hb_000649_240--Hb_006788_140 Hb_000451_070 Hb_000451_070 Hb_000649_240--Hb_000451_070 Hb_115241_010 Hb_115241_010 Hb_021888_050--Hb_115241_010 Hb_000975_360 Hb_000975_360 Hb_021888_050--Hb_000975_360 Hb_000948_080 Hb_000948_080 Hb_021888_050--Hb_000948_080 Hb_005568_080 Hb_005568_080 Hb_021888_050--Hb_005568_080 Hb_001902_190 Hb_001902_190 Hb_021888_050--Hb_001902_190 Hb_000432_040--Hb_028487_020 Hb_001564_080 Hb_001564_080 Hb_000432_040--Hb_001564_080 Hb_000432_040--Hb_002097_200 Hb_006582_020 Hb_006582_020 Hb_000432_040--Hb_006582_020 Hb_000432_040--Hb_115241_010 Hb_000432_040--Hb_000451_070 Hb_000302_260 Hb_000302_260 Hb_028487_020--Hb_000302_260 Hb_005306_190 Hb_005306_190 Hb_028487_020--Hb_005306_190 Hb_028487_020--Hb_002097_200 Hb_028487_020--Hb_000451_070 Hb_028487_020--Hb_001564_080 Hb_189208_020 Hb_189208_020 Hb_002097_200--Hb_189208_020 Hb_088753_010 Hb_088753_010 Hb_002097_200--Hb_088753_010 Hb_000987_060 Hb_000987_060 Hb_002097_200--Hb_000987_060 Hb_010381_030 Hb_010381_030 Hb_002097_200--Hb_010381_030 Hb_008511_100 Hb_008511_100 Hb_002097_200--Hb_008511_100 Hb_003752_100 Hb_003752_100 Hb_002097_200--Hb_003752_100 Hb_000019_040 Hb_000019_040 Hb_006788_140--Hb_000019_040 Hb_006788_140--Hb_000987_060 Hb_006788_140--Hb_189208_020 Hb_003175_030 Hb_003175_030 Hb_006788_140--Hb_003175_030 Hb_000976_280 Hb_000976_280 Hb_006788_140--Hb_000976_280 Hb_006788_140--Hb_002097_200 Hb_000402_210 Hb_000402_210 Hb_000451_070--Hb_000402_210 Hb_001894_050 Hb_001894_050 Hb_000451_070--Hb_001894_050 Hb_000451_070--Hb_088753_010 Hb_000451_070--Hb_189208_020 Hb_002042_130 Hb_002042_130 Hb_000451_070--Hb_002042_130 Hb_001153_180 Hb_001153_180 Hb_000451_070--Hb_001153_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.69612 12.9282 1.00066 5.17814 2.13486 0.862184
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.29803 8.15576 4.37963 4.39456 1.17123

CAGE analysis