Hb_000649_250

Information

Type transcription factor
Description TF Family: C2H2
Location Contig649: 264595-268715
Sequence    

Annotation

kegg
ID rcu:RCOM_0597580
description nucleic acid binding protein, putative
nr
ID XP_012072290.1
description PREDICTED: UBX domain-containing protein 6 [Jatropha curcas]
swissprot
ID Q9ZU93
description Plant UBX domain-containing protein 2 OS=Arabidopsis thaliana GN=PUX2 PE=1 SV=2
trembl
ID A0A067L1Y2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04747 PE=4 SV=1
Gene Ontology
ID GO:0046872
description ubx domain-containing protein 6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52497: 264345-268435
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000649_250 0.0 transcription factor TF Family: C2H2 PREDICTED: UBX domain-containing protein 6 [Jatropha curcas]
2 Hb_003918_030 0.0703547175 - - PREDICTED: oxysterol-binding protein-related protein 1C-like isoform X1 [Jatropha curcas]
3 Hb_026198_060 0.0708999664 - - PREDICTED: calcium-dependent protein kinase 11 [Jatropha curcas]
4 Hb_004899_040 0.0730541721 transcription factor TF Family: ARF Auxin response factor [Medicago truncatula]
5 Hb_022425_060 0.0747899 - - PREDICTED: protein phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein isoform X1 [Jatropha curcas]
6 Hb_004517_020 0.0752678835 - - PREDICTED: probable ubiquitin-like-specific protease 2B isoform X1 [Jatropha curcas]
7 Hb_001257_100 0.0754203923 transcription factor TF Family: E2F-DP PREDICTED: transcription factor E2FB isoform X1 [Jatropha curcas]
8 Hb_000110_350 0.0763582713 - - PREDICTED: ubiquitin receptor RAD23c-like isoform X2 [Gossypium raimondii]
9 Hb_005288_140 0.0763927116 - - PREDICTED: serine/threonine protein phosphatase 2A regulatory subunit B''beta-like [Jatropha curcas]
10 Hb_001545_150 0.0780877879 transcription factor TF Family: NAC PREDICTED: uncharacterized protein LOC105635527 [Jatropha curcas]
11 Hb_000069_130 0.0797748573 - - PREDICTED: uncharacterized protein LOC105642829 isoform X1 [Jatropha curcas]
12 Hb_003398_080 0.0802425054 - - PREDICTED: telomere repeat-binding protein 4 isoform X3 [Jatropha curcas]
13 Hb_011249_060 0.0808693705 - - hypothetical protein POPTR_0018s12600g [Populus trichocarpa]
14 Hb_000205_240 0.0816281335 - - ubiquitin-protein ligase, putative [Ricinus communis]
15 Hb_002928_190 0.0825108959 transcription factor TF Family: RWP-RK PREDICTED: protein NLP4 [Jatropha curcas]
16 Hb_000363_120 0.083550762 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 20 [Jatropha curcas]
17 Hb_001473_110 0.0844877421 - - PREDICTED: ankyrin repeat domain-containing protein 13C-like [Jatropha curcas]
18 Hb_002119_090 0.0846589608 - - PREDICTED: protein OBERON 3 [Jatropha curcas]
19 Hb_000977_300 0.0848019025 - - PREDICTED: LOW QUALITY PROTEIN: probable E3 ubiquitin-protein ligase ARI8 [Malus domestica]
20 Hb_000479_070 0.0852990065 - - PREDICTED: uncharacterized protein LOC105644141 [Jatropha curcas]

Gene co-expression network

sample Hb_000649_250 Hb_000649_250 Hb_003918_030 Hb_003918_030 Hb_000649_250--Hb_003918_030 Hb_026198_060 Hb_026198_060 Hb_000649_250--Hb_026198_060 Hb_004899_040 Hb_004899_040 Hb_000649_250--Hb_004899_040 Hb_022425_060 Hb_022425_060 Hb_000649_250--Hb_022425_060 Hb_004517_020 Hb_004517_020 Hb_000649_250--Hb_004517_020 Hb_001257_100 Hb_001257_100 Hb_000649_250--Hb_001257_100 Hb_000479_070 Hb_000479_070 Hb_003918_030--Hb_000479_070 Hb_001545_150 Hb_001545_150 Hb_003918_030--Hb_001545_150 Hb_001473_110 Hb_001473_110 Hb_003918_030--Hb_001473_110 Hb_003929_210 Hb_003929_210 Hb_003918_030--Hb_003929_210 Hb_003939_060 Hb_003939_060 Hb_003918_030--Hb_003939_060 Hb_000110_350 Hb_000110_350 Hb_003918_030--Hb_000110_350 Hb_005288_140 Hb_005288_140 Hb_026198_060--Hb_005288_140 Hb_026198_060--Hb_022425_060 Hb_026198_060--Hb_001257_100 Hb_026198_060--Hb_004517_020 Hb_001259_120 Hb_001259_120 Hb_026198_060--Hb_001259_120 Hb_011249_060 Hb_011249_060 Hb_004899_040--Hb_011249_060 Hb_000363_120 Hb_000363_120 Hb_004899_040--Hb_000363_120 Hb_009302_030 Hb_009302_030 Hb_004899_040--Hb_009302_030 Hb_000094_090 Hb_000094_090 Hb_004899_040--Hb_000094_090 Hb_000703_200 Hb_000703_200 Hb_004899_040--Hb_000703_200 Hb_001828_170 Hb_001828_170 Hb_022425_060--Hb_001828_170 Hb_020805_150 Hb_020805_150 Hb_022425_060--Hb_020805_150 Hb_001329_200 Hb_001329_200 Hb_022425_060--Hb_001329_200 Hb_010407_080 Hb_010407_080 Hb_022425_060--Hb_010407_080 Hb_007839_020 Hb_007839_020 Hb_022425_060--Hb_007839_020 Hb_022425_060--Hb_003918_030 Hb_000120_910 Hb_000120_910 Hb_004517_020--Hb_000120_910 Hb_001723_010 Hb_001723_010 Hb_004517_020--Hb_001723_010 Hb_000977_300 Hb_000977_300 Hb_004517_020--Hb_000977_300 Hb_000008_240 Hb_000008_240 Hb_004517_020--Hb_000008_240 Hb_000373_170 Hb_000373_170 Hb_004517_020--Hb_000373_170 Hb_004517_020--Hb_000110_350 Hb_000671_080 Hb_000671_080 Hb_001257_100--Hb_000671_080 Hb_000926_150 Hb_000926_150 Hb_001257_100--Hb_000926_150 Hb_002812_010 Hb_002812_010 Hb_001257_100--Hb_002812_010 Hb_002119_090 Hb_002119_090 Hb_001257_100--Hb_002119_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.2113 40.3707 22.5969 23.2433 10.2321 15.9927
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.9294 10.0357 12.2023 15.2647 16.5077

CAGE analysis