Hb_000649_310

Information

Type -
Description -
Location Contig649: 320701-321972
Sequence    

Annotation

kegg
ID cic:CICLE_v10014030mg
description hypothetical protein
nr
ID XP_012072284.1
description PREDICTED: mediator of RNA polymerase II transcription subunit 23 isoform X2 [Jatropha curcas]
swissprot
ID F4I4P3
description Mediator of RNA polymerase II transcription subunit 23 OS=Arabidopsis thaliana GN=MED23 PE=1 SV=1
trembl
ID A0A067L0T7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04743 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000649_310 0.0 - - PREDICTED: mediator of RNA polymerase II transcription subunit 23 isoform X2 [Jatropha curcas]
2 Hb_009252_120 0.2391200596 - - conserved hypothetical protein [Ricinus communis]
3 Hb_002820_120 0.2555219263 transcription factor TF Family: ERF AP2 domain-containing transcription factor family protein [Populus trichocarpa]
4 Hb_176894_010 0.2737840938 - - -
5 Hb_006816_160 0.2994388912 - - hypothetical protein RCOM_1434920 [Ricinus communis]
6 Hb_001999_240 0.301771083 - - PREDICTED: josephin-like protein [Populus euphratica]
7 Hb_001862_170 0.3027116594 - - zinc finger protein, putative [Ricinus communis]
8 Hb_006198_140 0.3033314358 - - hypothetical protein L484_015208 [Morus notabilis]
9 Hb_005045_050 0.3056613564 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein 3 [Jatropha curcas]
10 Hb_000813_150 0.3061172305 - - -
11 Hb_000465_360 0.3075505735 - - hypothetical protein CISIN_1g024854mg [Citrus sinensis]
12 Hb_005363_010 0.3084084046 - - hypothetical protein JCGZ_13835 [Jatropha curcas]
13 Hb_001405_240 0.3098609836 - - conserved hypothetical protein [Ricinus communis]
14 Hb_003910_020 0.3113831604 - - PREDICTED: reticulon-like protein B13 [Jatropha curcas]
15 Hb_010883_220 0.3171370914 - - PREDICTED: flavonol synthase/flavanone 3-hydroxylase-like [Prunus mume]
16 Hb_105660_010 0.318969052 - - PREDICTED: potassium channel AKT6-like [Jatropha curcas]
17 Hb_000445_010 0.3190410502 - - PREDICTED: uncharacterized protein LOC105113411 [Populus euphratica]
18 Hb_001558_070 0.3197434417 - - PREDICTED: mitochondrial uncoupling protein 5 [Jatropha curcas]
19 Hb_000504_110 0.3200284037 - - F-box/LRR-repeat protein, putative [Ricinus communis]
20 Hb_002067_130 0.3226758127 - - putative non-LTR retroelement reverse transcriptase [Arabidopsis thaliana]

Gene co-expression network

sample Hb_000649_310 Hb_000649_310 Hb_009252_120 Hb_009252_120 Hb_000649_310--Hb_009252_120 Hb_002820_120 Hb_002820_120 Hb_000649_310--Hb_002820_120 Hb_176894_010 Hb_176894_010 Hb_000649_310--Hb_176894_010 Hb_006816_160 Hb_006816_160 Hb_000649_310--Hb_006816_160 Hb_001999_240 Hb_001999_240 Hb_000649_310--Hb_001999_240 Hb_001862_170 Hb_001862_170 Hb_000649_310--Hb_001862_170 Hb_009252_120--Hb_006816_160 Hb_009252_120--Hb_002820_120 Hb_003910_020 Hb_003910_020 Hb_009252_120--Hb_003910_020 Hb_088117_010 Hb_088117_010 Hb_009252_120--Hb_088117_010 Hb_162047_010 Hb_162047_010 Hb_009252_120--Hb_162047_010 Hb_000813_150 Hb_000813_150 Hb_009252_120--Hb_000813_150 Hb_002820_120--Hb_006816_160 Hb_035006_010 Hb_035006_010 Hb_002820_120--Hb_035006_010 Hb_001481_110 Hb_001481_110 Hb_002820_120--Hb_001481_110 Hb_005687_060 Hb_005687_060 Hb_002820_120--Hb_005687_060 Hb_001059_050 Hb_001059_050 Hb_002820_120--Hb_001059_050 Hb_018691_020 Hb_018691_020 Hb_176894_010--Hb_018691_020 Hb_178793_010 Hb_178793_010 Hb_176894_010--Hb_178793_010 Hb_105660_010 Hb_105660_010 Hb_176894_010--Hb_105660_010 Hb_007163_040 Hb_007163_040 Hb_176894_010--Hb_007163_040 Hb_002027_170 Hb_002027_170 Hb_176894_010--Hb_002027_170 Hb_006185_010 Hb_006185_010 Hb_176894_010--Hb_006185_010 Hb_006816_160--Hb_162047_010 Hb_004767_010 Hb_004767_010 Hb_006816_160--Hb_004767_010 Hb_161954_010 Hb_161954_010 Hb_006816_160--Hb_161954_010 Hb_000445_010 Hb_000445_010 Hb_006816_160--Hb_000445_010 Hb_001999_240--Hb_002820_120 Hb_005363_010 Hb_005363_010 Hb_001999_240--Hb_005363_010 Hb_001221_520 Hb_001221_520 Hb_001999_240--Hb_001221_520 Hb_001999_240--Hb_003910_020 Hb_009557_050 Hb_009557_050 Hb_001999_240--Hb_009557_050 Hb_186647_010 Hb_186647_010 Hb_001999_240--Hb_186647_010 Hb_001558_070 Hb_001558_070 Hb_001862_170--Hb_001558_070 Hb_073171_010 Hb_073171_010 Hb_001862_170--Hb_073171_010 Hb_008948_060 Hb_008948_060 Hb_001862_170--Hb_008948_060 Hb_001006_030 Hb_001006_030 Hb_001862_170--Hb_001006_030 Hb_001493_170 Hb_001493_170 Hb_001862_170--Hb_001493_170 Hb_002461_070 Hb_002461_070 Hb_001862_170--Hb_002461_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.68714 0 2.0954 0.247328 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.548417 0.434123 0 0.812884 0

CAGE analysis