Hb_000654_030

Information

Type -
Description -
Location Contig654: 88427-93728
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000654_030 0.0 - - -
2 Hb_002217_470 0.1393949347 - - PREDICTED: uncharacterized protein LOC105643559 [Jatropha curcas]
3 Hb_000089_200 0.1788300621 - - hypothetical protein VITISV_019292 [Vitis vinifera]
4 Hb_000913_040 0.1835546813 - - Methyltransferase-related protein, putative [Theobroma cacao]
5 Hb_026549_010 0.1840840769 - - -
6 Hb_000656_190 0.1946389368 - - PREDICTED: probable nucleoside diphosphate kinase 5 [Jatropha curcas]
7 Hb_001584_260 0.2033669987 - - zinc finger protein, putative [Ricinus communis]
8 Hb_002148_020 0.2060111789 - - aldo-keto reductase, putative [Ricinus communis]
9 Hb_000023_160 0.209510764 - - PREDICTED: uncharacterized protein LOC105636423 isoform X1 [Jatropha curcas]
10 Hb_118507_010 0.2190162489 - - hypothetical protein VITISV_019292 [Vitis vinifera]
11 Hb_090158_010 0.2221194096 - - hypothetical protein RCOM_1968400 [Ricinus communis]
12 Hb_002133_020 0.2251446852 - - conserved hypothetical protein [Ricinus communis]
13 Hb_003464_070 0.2259787673 transcription factor TF Family: Trihelix PREDICTED: stress response protein NST1 [Jatropha curcas]
14 Hb_000580_100 0.227486997 - - PREDICTED: uncharacterized protein LOC105643133 isoform X1 [Jatropha curcas]
15 Hb_011671_480 0.2284154565 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000538_240 0.22856318 - - PREDICTED: uncharacterized protein LOC105643073 [Jatropha curcas]
17 Hb_000868_050 0.2290346786 - - RAD51 homolog [Populus nigra]
18 Hb_085972_010 0.2304705666 transcription factor TF Family: NAC NAC transcription factor 066 [Jatropha curcas]
19 Hb_002073_010 0.2309282634 - - -
20 Hb_010789_020 0.2310016908 - - ubiquitin-conjugating enzyme e2S, putative [Ricinus communis]

Gene co-expression network

sample Hb_000654_030 Hb_000654_030 Hb_002217_470 Hb_002217_470 Hb_000654_030--Hb_002217_470 Hb_000089_200 Hb_000089_200 Hb_000654_030--Hb_000089_200 Hb_000913_040 Hb_000913_040 Hb_000654_030--Hb_000913_040 Hb_026549_010 Hb_026549_010 Hb_000654_030--Hb_026549_010 Hb_000656_190 Hb_000656_190 Hb_000654_030--Hb_000656_190 Hb_001584_260 Hb_001584_260 Hb_000654_030--Hb_001584_260 Hb_000023_160 Hb_000023_160 Hb_002217_470--Hb_000023_160 Hb_002217_470--Hb_026549_010 Hb_000317_160 Hb_000317_160 Hb_002217_470--Hb_000317_160 Hb_002148_020 Hb_002148_020 Hb_002217_470--Hb_002148_020 Hb_034552_030 Hb_034552_030 Hb_002217_470--Hb_034552_030 Hb_001329_020 Hb_001329_020 Hb_000089_200--Hb_001329_020 Hb_000110_380 Hb_000110_380 Hb_000089_200--Hb_000110_380 Hb_002259_060 Hb_002259_060 Hb_000089_200--Hb_002259_060 Hb_011485_090 Hb_011485_090 Hb_000089_200--Hb_011485_090 Hb_000089_200--Hb_000656_190 Hb_000580_100 Hb_000580_100 Hb_000913_040--Hb_000580_100 Hb_000953_130 Hb_000953_130 Hb_000913_040--Hb_000953_130 Hb_000116_560 Hb_000116_560 Hb_000913_040--Hb_000116_560 Hb_007390_020 Hb_007390_020 Hb_000913_040--Hb_007390_020 Hb_011671_480 Hb_011671_480 Hb_000913_040--Hb_011671_480 Hb_000913_040--Hb_001584_260 Hb_000868_050 Hb_000868_050 Hb_026549_010--Hb_000868_050 Hb_016734_080 Hb_016734_080 Hb_026549_010--Hb_016734_080 Hb_001054_020 Hb_001054_020 Hb_026549_010--Hb_001054_020 Hb_000622_200 Hb_000622_200 Hb_026549_010--Hb_000622_200 Hb_000889_010 Hb_000889_010 Hb_000656_190--Hb_000889_010 Hb_000656_190--Hb_000913_040 Hb_004449_180 Hb_004449_180 Hb_000656_190--Hb_004449_180 Hb_001208_040 Hb_001208_040 Hb_000656_190--Hb_001208_040 Hb_000656_190--Hb_007390_020 Hb_002477_010 Hb_002477_010 Hb_000656_190--Hb_002477_010 Hb_039021_010 Hb_039021_010 Hb_001584_260--Hb_039021_010 Hb_001584_260--Hb_000580_100 Hb_001825_040 Hb_001825_040 Hb_001584_260--Hb_001825_040 Hb_001482_050 Hb_001482_050 Hb_001584_260--Hb_001482_050 Hb_007850_030 Hb_007850_030 Hb_001584_260--Hb_007850_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0853594 0.209989 0.262868 0.886529 0.242817 0.158907
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.244254 0.461065 0.0708562 0.432333 0

CAGE analysis