Hb_000654_060

Information

Type -
Description -
Location Contig654: 112506-115006
Sequence    

Annotation

kegg
ID cic:CICLE_v10027550mg
description hypothetical protein
nr
ID XP_006428178.1
description hypothetical protein CICLE_v10027550mg [Citrus clementina]
swissprot
ID Q9GQQ0
description Protein spinster OS=Drosophila melanogaster GN=spin PE=1 SV=1
trembl
ID V4S235
description Uncharacterized protein OS=Citrus clementina GN=CICLE_v10027550mg PE=4 SV=1
Gene Ontology
ID GO:0016021
description protein spinster homolog 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52628: 112850-113254
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000654_060 0.0 - - hypothetical protein CICLE_v10027550mg [Citrus clementina]
2 Hb_152528_010 0.048278452 - - hypothetical protein JCGZ_06105 [Jatropha curcas]
3 Hb_022845_010 0.0630124238 - - PREDICTED: protein NRT1/ PTR FAMILY 5.10-like [Jatropha curcas]
4 Hb_000756_030 0.0743508252 - - PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
5 Hb_108744_010 0.0860726369 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
6 Hb_001398_110 0.0883839832 - - Early nodulin 55-2 precursor, putative [Ricinus communis]
7 Hb_022465_010 0.0885233798 - - hypothetical protein JCGZ_06012 [Jatropha curcas]
8 Hb_000331_020 0.1018020413 - - cytochrome P450, putative [Ricinus communis]
9 Hb_001190_030 0.1046939026 - - hypothetical protein VITISV_017115 [Vitis vinifera]
10 Hb_001322_220 0.1078356338 - - Major pollen allergen Ory s 1 precursor, putative [Ricinus communis]
11 Hb_002362_010 0.1098951206 - - hypothetical protein JCGZ_12328 [Jatropha curcas]
12 Hb_000045_290 0.1129943552 - - -
13 Hb_004241_140 0.1200881494 - - S-locus lectin protein kinase family protein, putative [Theobroma cacao]
14 Hb_034498_010 0.1210751793 - - PREDICTED: uncharacterized protein LOC105636842 [Jatropha curcas]
15 Hb_120289_010 0.1258141257 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Jatropha curcas]
16 Hb_000056_290 0.1303348458 - - conserved hypothetical protein [Ricinus communis]
17 Hb_125781_010 0.1316237933 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
18 Hb_001117_020 0.1323472998 - - hypothetical protein CICLE_v10008579mg [Citrus clementina]
19 Hb_005649_070 0.1362865747 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000162_160 0.1369639216 - - PREDICTED: auxin transporter-like protein 5 [Populus euphratica]

Gene co-expression network

sample Hb_000654_060 Hb_000654_060 Hb_152528_010 Hb_152528_010 Hb_000654_060--Hb_152528_010 Hb_022845_010 Hb_022845_010 Hb_000654_060--Hb_022845_010 Hb_000756_030 Hb_000756_030 Hb_000654_060--Hb_000756_030 Hb_108744_010 Hb_108744_010 Hb_000654_060--Hb_108744_010 Hb_001398_110 Hb_001398_110 Hb_000654_060--Hb_001398_110 Hb_022465_010 Hb_022465_010 Hb_000654_060--Hb_022465_010 Hb_152528_010--Hb_000756_030 Hb_152528_010--Hb_108744_010 Hb_152528_010--Hb_001398_110 Hb_152528_010--Hb_022845_010 Hb_004241_140 Hb_004241_140 Hb_152528_010--Hb_004241_140 Hb_001322_220 Hb_001322_220 Hb_022845_010--Hb_001322_220 Hb_001190_030 Hb_001190_030 Hb_022845_010--Hb_001190_030 Hb_120289_010 Hb_120289_010 Hb_022845_010--Hb_120289_010 Hb_000162_160 Hb_000162_160 Hb_022845_010--Hb_000162_160 Hb_000756_030--Hb_108744_010 Hb_006142_020 Hb_006142_020 Hb_000756_030--Hb_006142_020 Hb_000756_030--Hb_004241_140 Hb_000756_030--Hb_001398_110 Hb_108744_010--Hb_006142_020 Hb_169136_010 Hb_169136_010 Hb_108744_010--Hb_169136_010 Hb_005649_070 Hb_005649_070 Hb_108744_010--Hb_005649_070 Hb_000045_290 Hb_000045_290 Hb_001398_110--Hb_000045_290 Hb_001117_020 Hb_001117_020 Hb_001398_110--Hb_001117_020 Hb_001398_110--Hb_004241_140 Hb_019429_020 Hb_019429_020 Hb_001398_110--Hb_019429_020 Hb_000331_020 Hb_000331_020 Hb_001398_110--Hb_000331_020 Hb_001398_110--Hb_005649_070 Hb_023712_020 Hb_023712_020 Hb_022465_010--Hb_023712_020 Hb_006197_010 Hb_006197_010 Hb_022465_010--Hb_006197_010 Hb_057721_010 Hb_057721_010 Hb_022465_010--Hb_057721_010 Hb_022465_010--Hb_001398_110 Hb_177179_020 Hb_177179_020 Hb_022465_010--Hb_177179_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0324011 0.338613 0.179494 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis