Hb_000656_010

Information

Type -
Description -
Location Contig656: 3156-15168
Sequence    

Annotation

kegg
ID cit:102629330
description uncharacterized LOC102629330
nr
ID XP_012068833.1
description PREDICTED: uncharacterized protein LOC105631354 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KWS4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24660 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52695: 11202-11498
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000656_010 0.0 - - PREDICTED: uncharacterized protein LOC105631354 isoform X1 [Jatropha curcas]
2 Hb_001876_010 0.0661522809 - - PREDICTED: arginyl-tRNA--protein transferase 2-like isoform X1 [Jatropha curcas]
3 Hb_000789_200 0.067815522 - - mitochondrial processing peptidase alpha subunit, putative [Ricinus communis]
4 Hb_001629_030 0.0690068882 - - PAP-specific phosphatase HAL2-like family protein [Populus trichocarpa]
5 Hb_005976_080 0.0708771734 - - PREDICTED: RNA-binding protein Musashi homolog 1 [Jatropha curcas]
6 Hb_000189_550 0.0720715639 - - PREDICTED: protein transport protein Sec24-like At4g32640 [Jatropha curcas]
7 Hb_013726_090 0.0746473981 - - PREDICTED: E3 ubiquitin-protein ligase At1g63170 [Jatropha curcas]
8 Hb_000095_080 0.0748270993 - - PREDICTED: probable U3 small nucleolar RNA-associated protein 7 [Jatropha curcas]
9 Hb_003206_110 0.0751972318 - - Putative 1-aminocyclopropane-1-carboxylate deaminase [Gossypium arboreum]
10 Hb_003544_160 0.0754015532 - - -
11 Hb_001818_100 0.0769615696 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 11-like [Jatropha curcas]
12 Hb_006275_070 0.0771508401 - - PREDICTED: general transcription factor IIF subunit 2 [Jatropha curcas]
13 Hb_001195_400 0.0778498689 - - glucose-6-phosphate isomerase, putative [Ricinus communis]
14 Hb_041290_020 0.0793009978 - - PREDICTED: centromere/kinetochore protein zw10 homolog isoform X2 [Jatropha curcas]
15 Hb_027073_020 0.0795111805 - - PREDICTED: testis-expressed sequence 10 protein isoform X2 [Jatropha curcas]
16 Hb_000479_250 0.080769042 - - PREDICTED: uncharacterized protein LOC105644121 [Jatropha curcas]
17 Hb_004846_220 0.0811357024 - - PREDICTED: probable protein phosphatase 2C 11 isoform X1 [Jatropha curcas]
18 Hb_000359_210 0.0833108975 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000111_320 0.08411693 transcription factor TF Family: bZIP Transcription factor HBP-1b(c1), putative [Ricinus communis]
20 Hb_170138_010 0.0851193227 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000656_010 Hb_000656_010 Hb_001876_010 Hb_001876_010 Hb_000656_010--Hb_001876_010 Hb_000789_200 Hb_000789_200 Hb_000656_010--Hb_000789_200 Hb_001629_030 Hb_001629_030 Hb_000656_010--Hb_001629_030 Hb_005976_080 Hb_005976_080 Hb_000656_010--Hb_005976_080 Hb_000189_550 Hb_000189_550 Hb_000656_010--Hb_000189_550 Hb_013726_090 Hb_013726_090 Hb_000656_010--Hb_013726_090 Hb_000011_060 Hb_000011_060 Hb_001876_010--Hb_000011_060 Hb_002908_050 Hb_002908_050 Hb_001876_010--Hb_002908_050 Hb_001876_010--Hb_000189_550 Hb_000069_210 Hb_000069_210 Hb_001876_010--Hb_000069_210 Hb_000028_390 Hb_000028_390 Hb_001876_010--Hb_000028_390 Hb_000984_170 Hb_000984_170 Hb_001876_010--Hb_000984_170 Hb_027073_020 Hb_027073_020 Hb_000789_200--Hb_027073_020 Hb_002768_060 Hb_002768_060 Hb_000789_200--Hb_002768_060 Hb_004480_100 Hb_004480_100 Hb_000789_200--Hb_004480_100 Hb_000720_050 Hb_000720_050 Hb_000789_200--Hb_000720_050 Hb_001789_110 Hb_001789_110 Hb_000789_200--Hb_001789_110 Hb_001818_100 Hb_001818_100 Hb_001629_030--Hb_001818_100 Hb_005601_040 Hb_005601_040 Hb_001629_030--Hb_005601_040 Hb_004108_160 Hb_004108_160 Hb_001629_030--Hb_004108_160 Hb_004052_170 Hb_004052_170 Hb_001629_030--Hb_004052_170 Hb_003153_010 Hb_003153_010 Hb_001629_030--Hb_003153_010 Hb_015675_040 Hb_015675_040 Hb_005976_080--Hb_015675_040 Hb_004159_020 Hb_004159_020 Hb_005976_080--Hb_004159_020 Hb_003878_150 Hb_003878_150 Hb_005976_080--Hb_003878_150 Hb_005976_080--Hb_027073_020 Hb_001195_400 Hb_001195_400 Hb_005976_080--Hb_001195_400 Hb_000189_550--Hb_002908_050 Hb_001105_020 Hb_001105_020 Hb_000189_550--Hb_001105_020 Hb_000189_550--Hb_000011_060 Hb_000352_310 Hb_000352_310 Hb_000189_550--Hb_000352_310 Hb_013726_090--Hb_000011_060 Hb_002600_150 Hb_002600_150 Hb_013726_090--Hb_002600_150 Hb_000138_100 Hb_000138_100 Hb_013726_090--Hb_000138_100 Hb_003883_060 Hb_003883_060 Hb_013726_090--Hb_003883_060 Hb_001999_310 Hb_001999_310 Hb_013726_090--Hb_001999_310 Hb_012498_010 Hb_012498_010 Hb_013726_090--Hb_012498_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.7201 0.790736 1.12233 1.71412 1.00604 1.47901
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.35042 1.24567 1.50533 1.96333 2.3514

CAGE analysis