Hb_000656_050

Information

Type -
Description -
Location Contig656: 27704-32398
Sequence    

Annotation

kegg
ID vvi:100253210
description 3-oxoacyl-[acyl-carrier-protein] synthase II, chloroplastic-like
nr
ID XP_010654405.1
description PREDICTED: 3-oxoacyl-[acyl-carrier-protein] synthase II, chloroplastic-like [Vitis vinifera]
swissprot
ID Q9C9P4
description 3-oxoacyl-[acyl-carrier-protein] synthase II, chloroplastic OS=Arabidopsis thaliana GN=KAS2 PE=1 SV=1
trembl
ID F6HXQ7
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_09s0002g00790 PE=3 SV=1
Gene Ontology
ID GO:0016747
description 3-oxoacyl-

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52699: 27996-28088 , PASA_asmbl_52700: 28161-28694
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000656_050 0.0 - - PREDICTED: 3-oxoacyl-[acyl-carrier-protein] synthase II, chloroplastic-like [Vitis vinifera]
2 Hb_177019_010 0.2750973388 - - Uncharacterized protein TCM_004012 [Theobroma cacao]
3 Hb_000186_310 0.2885689287 - - conserved hypothetical protein [Ricinus communis]
4 Hb_011139_050 0.2914035741 - - nicotinate phosphoribosyltransferase family protein [Populus trichocarpa]
5 Hb_004088_050 0.2957249006 - - hypothetical protein VITISV_027174 [Vitis vinifera]
6 Hb_007472_020 0.3182279431 - - hypothetical protein PRUPE_ppa016115mg [Prunus persica]
7 Hb_004502_010 0.3185446561 - - hypothetical protein JCGZ_23576 [Jatropha curcas]
8 Hb_000951_120 0.3216892378 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105636019 [Jatropha curcas]
9 Hb_044653_070 0.3238435016 - - hypothetical protein CICLE_v10018540mg [Citrus clementina]
10 Hb_004048_030 0.32704325 - - hypothetical protein B456_009G371200, partial [Gossypium raimondii]
11 Hb_004466_050 0.3295362181 - - PREDICTED: uncharacterized protein LOC105649250, partial [Jatropha curcas]
12 Hb_024677_010 0.3297955466 - - superoxide dismutase [fe], putative [Ricinus communis]
13 Hb_002540_050 0.3326332342 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g13770, mitochondrial [Jatropha curcas]
14 Hb_010583_030 0.3341049499 - - hypothetical protein PHAVU_011G114500g, partial [Phaseolus vulgaris]
15 Hb_006130_020 0.3360499821 - - S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis]
16 Hb_003940_050 0.3363453453 - - PREDICTED: uncharacterized protein LOC105160092 [Sesamum indicum]
17 Hb_002498_300 0.3366109928 - - BnaC04g50140D [Brassica napus]
18 Hb_181838_010 0.3382149676 - - PREDICTED: uncharacterized protein LOC105631275 [Jatropha curcas]
19 Hb_002518_100 0.3400626153 - - -
20 Hb_001584_380 0.3405266728 - - PREDICTED: tropomyosin-like [Jatropha curcas]

Gene co-expression network

sample Hb_000656_050 Hb_000656_050 Hb_177019_010 Hb_177019_010 Hb_000656_050--Hb_177019_010 Hb_000186_310 Hb_000186_310 Hb_000656_050--Hb_000186_310 Hb_011139_050 Hb_011139_050 Hb_000656_050--Hb_011139_050 Hb_004088_050 Hb_004088_050 Hb_000656_050--Hb_004088_050 Hb_007472_020 Hb_007472_020 Hb_000656_050--Hb_007472_020 Hb_004502_010 Hb_004502_010 Hb_000656_050--Hb_004502_010 Hb_004076_040 Hb_004076_040 Hb_177019_010--Hb_004076_040 Hb_004934_120 Hb_004934_120 Hb_177019_010--Hb_004934_120 Hb_007254_030 Hb_007254_030 Hb_177019_010--Hb_007254_030 Hb_000668_130 Hb_000668_130 Hb_177019_010--Hb_000668_130 Hb_002518_100 Hb_002518_100 Hb_177019_010--Hb_002518_100 Hb_006054_040 Hb_006054_040 Hb_000186_310--Hb_006054_040 Hb_002151_010 Hb_002151_010 Hb_000186_310--Hb_002151_010 Hb_000422_070 Hb_000422_070 Hb_000186_310--Hb_000422_070 Hb_004158_050 Hb_004158_050 Hb_000186_310--Hb_004158_050 Hb_008725_140 Hb_008725_140 Hb_000186_310--Hb_008725_140 Hb_001751_060 Hb_001751_060 Hb_000186_310--Hb_001751_060 Hb_011872_010 Hb_011872_010 Hb_011139_050--Hb_011872_010 Hb_000272_040 Hb_000272_040 Hb_011139_050--Hb_000272_040 Hb_148800_010 Hb_148800_010 Hb_011139_050--Hb_148800_010 Hb_007317_090 Hb_007317_090 Hb_011139_050--Hb_007317_090 Hb_004466_050 Hb_004466_050 Hb_011139_050--Hb_004466_050 Hb_000363_450 Hb_000363_450 Hb_004088_050--Hb_000363_450 Hb_000049_130 Hb_000049_130 Hb_004088_050--Hb_000049_130 Hb_001814_060 Hb_001814_060 Hb_004088_050--Hb_001814_060 Hb_181838_010 Hb_181838_010 Hb_004088_050--Hb_181838_010 Hb_002477_020 Hb_002477_020 Hb_004088_050--Hb_002477_020 Hb_003540_100 Hb_003540_100 Hb_004088_050--Hb_003540_100 Hb_004032_330 Hb_004032_330 Hb_007472_020--Hb_004032_330 Hb_000101_300 Hb_000101_300 Hb_007472_020--Hb_000101_300 Hb_000770_010 Hb_000770_010 Hb_007472_020--Hb_000770_010 Hb_004604_030 Hb_004604_030 Hb_007472_020--Hb_004604_030 Hb_000703_180 Hb_000703_180 Hb_007472_020--Hb_000703_180 Hb_021409_120 Hb_021409_120 Hb_007472_020--Hb_021409_120 Hb_025194_090 Hb_025194_090 Hb_004502_010--Hb_025194_090 Hb_005917_020 Hb_005917_020 Hb_004502_010--Hb_005917_020 Hb_003029_020 Hb_003029_020 Hb_004502_010--Hb_003029_020 Hb_005116_100 Hb_005116_100 Hb_004502_010--Hb_005116_100 Hb_005618_080 Hb_005618_080 Hb_004502_010--Hb_005618_080 Hb_000402_020 Hb_000402_020 Hb_004502_010--Hb_000402_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0107013 0.0404564 0.00773237 0 0.0303629
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0192867 0 0.0153575 0.0406667

CAGE analysis