Hb_000656_070

Information

Type -
Description -
Location Contig656: 45474-47747
Sequence    

Annotation

kegg
ID rcu:RCOM_1278650
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_002527661.1
description pentatricopeptide repeat-containing protein, putative [Ricinus communis]
swissprot
ID Q0WVK7
description Pentatricopeptide repeat-containing protein At1g05670, mitochondrial OS=Arabidopsis thaliana GN=At1g05670 PE=2 SV=1
trembl
ID B9SNU2
description Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_1278650 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000656_070 0.0 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
2 Hb_001862_130 0.0472925811 - - Protein FRIGIDA, putative [Ricinus communis]
3 Hb_122968_010 0.0580384507 - - hypothetical protein JCGZ_23576 [Jatropha curcas]
4 Hb_000406_200 0.0705271769 - - PREDICTED: translation initiation factor eIF-2B subunit epsilon-like isoform X4 [Jatropha curcas]
5 Hb_003734_010 0.0750389822 - - PREDICTED: double-strand break repair protein MRE11 [Jatropha curcas]
6 Hb_008484_060 0.0829329913 - - PREDICTED: allantoate deiminase isoform X3 [Populus euphratica]
7 Hb_001789_110 0.0854753976 - - ubiquitin-protein ligase, putative [Ricinus communis]
8 Hb_003117_030 0.0860604649 - - PREDICTED: protein RCC2 homolog [Jatropha curcas]
9 Hb_027073_020 0.0868033494 - - PREDICTED: testis-expressed sequence 10 protein isoform X2 [Jatropha curcas]
10 Hb_000749_190 0.0872179558 - - PREDICTED: nucleolar GTP-binding protein 2 [Populus euphratica]
11 Hb_041290_020 0.0892819607 - - PREDICTED: centromere/kinetochore protein zw10 homolog isoform X2 [Jatropha curcas]
12 Hb_002205_030 0.0896565124 - - PREDICTED: alpha-galactosidase 3 [Jatropha curcas]
13 Hb_188281_040 0.0897393396 - - PREDICTED: transcription initiation factor TFIID subunit 12 [Jatropha curcas]
14 Hb_001925_060 0.0906736111 - - PREDICTED: putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog [Jatropha curcas]
15 Hb_004846_220 0.0910837986 - - PREDICTED: probable protein phosphatase 2C 11 isoform X1 [Jatropha curcas]
16 Hb_000363_190 0.093417526 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM22-2-like isoform X1 [Jatropha curcas]
17 Hb_000329_800 0.0936840416 - - conserved hypothetical protein [Ricinus communis]
18 Hb_002414_050 0.0938640272 - - hypothetical protein CICLE_v10000243mg [Citrus clementina]
19 Hb_000749_010 0.0950192922 - - PREDICTED: non-canonical poly(A) RNA polymerase PAPD5 isoform X1 [Jatropha curcas]
20 Hb_001442_040 0.0950687878 - - PREDICTED: peroxisome biogenesis factor 10 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000656_070 Hb_000656_070 Hb_001862_130 Hb_001862_130 Hb_000656_070--Hb_001862_130 Hb_122968_010 Hb_122968_010 Hb_000656_070--Hb_122968_010 Hb_000406_200 Hb_000406_200 Hb_000656_070--Hb_000406_200 Hb_003734_010 Hb_003734_010 Hb_000656_070--Hb_003734_010 Hb_008484_060 Hb_008484_060 Hb_000656_070--Hb_008484_060 Hb_001789_110 Hb_001789_110 Hb_000656_070--Hb_001789_110 Hb_001862_130--Hb_000406_200 Hb_188281_040 Hb_188281_040 Hb_001862_130--Hb_188281_040 Hb_001862_130--Hb_003734_010 Hb_001862_130--Hb_122968_010 Hb_002205_030 Hb_002205_030 Hb_001862_130--Hb_002205_030 Hb_122968_010--Hb_001789_110 Hb_027073_020 Hb_027073_020 Hb_122968_010--Hb_027073_020 Hb_003117_030 Hb_003117_030 Hb_122968_010--Hb_003117_030 Hb_122968_010--Hb_000406_200 Hb_002897_090 Hb_002897_090 Hb_122968_010--Hb_002897_090 Hb_000138_100 Hb_000138_100 Hb_000406_200--Hb_000138_100 Hb_000347_430 Hb_000347_430 Hb_000406_200--Hb_000347_430 Hb_004109_080 Hb_004109_080 Hb_000406_200--Hb_004109_080 Hb_000406_200--Hb_188281_040 Hb_000340_530 Hb_000340_530 Hb_000406_200--Hb_000340_530 Hb_004327_040 Hb_004327_040 Hb_003734_010--Hb_004327_040 Hb_003913_070 Hb_003913_070 Hb_003734_010--Hb_003913_070 Hb_001814_030 Hb_001814_030 Hb_003734_010--Hb_001814_030 Hb_009976_020 Hb_009976_020 Hb_003734_010--Hb_009976_020 Hb_003517_040 Hb_003517_040 Hb_003734_010--Hb_003517_040 Hb_012760_100 Hb_012760_100 Hb_003734_010--Hb_012760_100 Hb_008484_060--Hb_009976_020 Hb_008484_060--Hb_003734_010 Hb_000830_030 Hb_000830_030 Hb_008484_060--Hb_000830_030 Hb_008484_060--Hb_012760_100 Hb_011231_020 Hb_011231_020 Hb_008484_060--Hb_011231_020 Hb_056691_060 Hb_056691_060 Hb_008484_060--Hb_056691_060 Hb_001789_110--Hb_027073_020 Hb_001789_110--Hb_003517_040 Hb_007413_010 Hb_007413_010 Hb_001789_110--Hb_007413_010 Hb_001789_110--Hb_188281_040 Hb_006913_020 Hb_006913_020 Hb_001789_110--Hb_006913_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.713037 1.40627 1.37565 1.38896 1.30512 1.91769
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.27341 1.60321 0.909124 2.16248 2.41928

CAGE analysis