Hb_000656_100

Information

Type -
Description -
Location Contig656: 59281-59559
Sequence    

Annotation

kegg
ID pop:POPTR_0007s02480g
description hypothetical protein
nr
ID XP_012071668.1
description PREDICTED: uncharacterized protein LOC105633651 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L2M2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04274 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52712: 59410-59625
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000656_100 0.0 - - PREDICTED: uncharacterized protein LOC105633651 [Jatropha curcas]
2 Hb_067776_010 0.1317666071 - - mitochondrial 39S ribosomal protein L53 [Hevea brasiliensis]
3 Hb_032927_010 0.1322471145 - - -
4 Hb_007012_020 0.1329804886 - - hypothetical protein POPTR_0005s11940g [Populus trichocarpa]
5 Hb_006502_080 0.155220216 - - -
6 Hb_000812_040 0.1557201033 - - zinc finger family protein [Populus trichocarpa]
7 Hb_005615_080 0.1638569582 - - PREDICTED: uncharacterized protein LOC105649609 [Jatropha curcas]
8 Hb_000648_030 0.1658155181 - - hypothetical protein PHAVU_002G055100g [Phaseolus vulgaris]
9 Hb_004060_030 0.1717052986 - - PREDICTED: primase homolog protein [Jatropha curcas]
10 Hb_028420_020 0.176015831 - - PREDICTED: uncharacterized protein LOC105647566 [Jatropha curcas]
11 Hb_056199_010 0.1763453089 - - PREDICTED: DNA-directed RNA polymerase V subunit 7-like [Populus euphratica]
12 Hb_005085_030 0.1773124023 - - PREDICTED: N-acetyltransferase 9-like protein isoform X1 [Jatropha curcas]
13 Hb_000062_420 0.1783576181 - - conserved hypothetical protein [Ricinus communis]
14 Hb_007441_270 0.1823032378 - - PREDICTED: 40S ribosomal protein S11 [Jatropha curcas]
15 Hb_000003_730 0.1846625321 - - DNA repair/transcription protein met18/mms19, putative [Ricinus communis]
16 Hb_076875_020 0.184927276 - - PREDICTED: alpha/beta hydrolase domain-containing protein 17B [Jatropha curcas]
17 Hb_000030_220 0.1863992235 - - PREDICTED: uncharacterized protein LOC105650405 [Jatropha curcas]
18 Hb_003687_020 0.1879764221 - - PREDICTED: 60S ribosomal protein L14-1 [Jatropha curcas]
19 Hb_007188_020 0.1880315723 - - hypothetical protein PRUPE_ppb010436mg [Prunus persica]
20 Hb_002205_050 0.1881211982 - - hypothetical protein JCGZ_03335 [Jatropha curcas]

Gene co-expression network

sample Hb_000656_100 Hb_000656_100 Hb_067776_010 Hb_067776_010 Hb_000656_100--Hb_067776_010 Hb_032927_010 Hb_032927_010 Hb_000656_100--Hb_032927_010 Hb_007012_020 Hb_007012_020 Hb_000656_100--Hb_007012_020 Hb_006502_080 Hb_006502_080 Hb_000656_100--Hb_006502_080 Hb_000812_040 Hb_000812_040 Hb_000656_100--Hb_000812_040 Hb_005615_080 Hb_005615_080 Hb_000656_100--Hb_005615_080 Hb_067776_010--Hb_000812_040 Hb_067776_010--Hb_032927_010 Hb_007441_270 Hb_007441_270 Hb_067776_010--Hb_007441_270 Hb_000648_030 Hb_000648_030 Hb_067776_010--Hb_000648_030 Hb_012675_070 Hb_012675_070 Hb_067776_010--Hb_012675_070 Hb_000003_730 Hb_000003_730 Hb_067776_010--Hb_000003_730 Hb_032927_010--Hb_000812_040 Hb_032927_010--Hb_006502_080 Hb_007188_020 Hb_007188_020 Hb_032927_010--Hb_007188_020 Hb_152554_010 Hb_152554_010 Hb_032927_010--Hb_152554_010 Hb_136731_010 Hb_136731_010 Hb_032927_010--Hb_136731_010 Hb_000380_010 Hb_000380_010 Hb_007012_020--Hb_000380_010 Hb_007012_020--Hb_006502_080 Hb_009543_030 Hb_009543_030 Hb_007012_020--Hb_009543_030 Hb_005656_050 Hb_005656_050 Hb_007012_020--Hb_005656_050 Hb_007012_020--Hb_067776_010 Hb_000684_230 Hb_000684_230 Hb_007012_020--Hb_000684_230 Hb_006502_080--Hb_000812_040 Hb_006502_080--Hb_136731_010 Hb_006502_080--Hb_067776_010 Hb_000329_770 Hb_000329_770 Hb_006502_080--Hb_000329_770 Hb_000812_040--Hb_152554_010 Hb_140291_010 Hb_140291_010 Hb_000812_040--Hb_140291_010 Hb_022250_130 Hb_022250_130 Hb_000812_040--Hb_022250_130 Hb_010423_040 Hb_010423_040 Hb_005615_080--Hb_010423_040 Hb_002260_150 Hb_002260_150 Hb_005615_080--Hb_002260_150 Hb_002296_040 Hb_002296_040 Hb_005615_080--Hb_002296_040 Hb_001009_300 Hb_001009_300 Hb_005615_080--Hb_001009_300 Hb_021238_050 Hb_021238_050 Hb_005615_080--Hb_021238_050 Hb_005615_080--Hb_000003_730
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.578764 0.372898 0.33211 1.64655 1.52989 6.23593
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.35913 3.5762 0.976648 2.00161 1.0556

CAGE analysis