Hb_000656_170

Information

Type -
Description -
Location Contig656: 110955-115164
Sequence    

Annotation

kegg
ID rcu:RCOM_0392140
description lsm1, putative
nr
ID XP_002532727.1
description lsm1, putative [Ricinus communis]
swissprot
ID Q8LFL8
description Sm-like protein LSM1B OS=Arabidopsis thaliana GN=LSM1B PE=1 SV=1
trembl
ID B9T3A8
description Lsm1, putative OS=Ricinus communis GN=RCOM_0392140 PE=4 SV=1
Gene Ontology
ID GO:0000932
description u6 snrna-associated sm-like protein lsm1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52721: 110970-115064 , PASA_asmbl_52722: 113831-114308 , PASA_asmbl_52724: 112828-113034
cDNA
(Sanger)
(ID:Location)		 009_J11.ab1: 113233-115026

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000656_170 0.0 - - lsm1, putative [Ricinus communis]
2 Hb_004032_010 0.0531298932 - - PREDICTED: uncharacterized protein LOC105635123 [Jatropha curcas]
3 Hb_003108_020 0.0676248785 - - PREDICTED: transmembrane protein 18 [Jatropha curcas]
4 Hb_000102_020 0.0751049713 - - hypothetical protein JCGZ_11933 [Jatropha curcas]
5 Hb_009051_030 0.0758509361 - - PREDICTED: thioredoxin O1, mitochondrial-like [Jatropha curcas]
6 Hb_007441_040 0.0768426083 - - PREDICTED: protein mago nashi homolog [Jatropha curcas]
7 Hb_000479_190 0.0791376316 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000172_320 0.0794338552 - - PREDICTED: ribosome biogenesis protein TSR3 homolog [Jatropha curcas]
9 Hb_003125_010 0.080688191 - - PREDICTED: uncharacterized protein LOC105640205 [Jatropha curcas]
10 Hb_004108_070 0.081667358 - - PREDICTED: BTB/POZ and MATH domain-containing protein 2-like [Jatropha curcas]
11 Hb_000002_380 0.0818104064 - - PREDICTED: bet1-like SNARE 1-2 [Jatropha curcas]
12 Hb_012799_160 0.0823167354 - - PREDICTED: ADP-ribosylation factor-related protein 1-like [Jatropha curcas]
13 Hb_002296_040 0.0829921851 - - PREDICTED: DNA-directed RNA polymerase II subunit 4 [Jatropha curcas]
14 Hb_000792_130 0.08311691 - - 60S ribosomal L35a-3 -like protein [Gossypium arboreum]
15 Hb_009615_070 0.0836635238 - - type X protein phosphatase-II [Populus trichocarpa]
16 Hb_001057_040 0.0854949867 - - PREDICTED: oligosaccharyltransferase complex subunit ostc [Jatropha curcas]
17 Hb_004899_370 0.0865813929 - - hypothetical protein CICLE_v10009013mg [Citrus clementina]
18 Hb_002226_070 0.0868399287 - - PREDICTED: uncharacterized CRM domain-containing protein At3g25440, chloroplastic [Jatropha curcas]
19 Hb_000421_220 0.0870604229 - - PREDICTED: tRNA-splicing endonuclease subunit Sen2-1-like isoform X2 [Jatropha curcas]
20 Hb_000152_420 0.0870775197 - - hypothetical protein B456_001G174200, partial [Gossypium raimondii]

Gene co-expression network

sample Hb_000656_170 Hb_000656_170 Hb_004032_010 Hb_004032_010 Hb_000656_170--Hb_004032_010 Hb_003108_020 Hb_003108_020 Hb_000656_170--Hb_003108_020 Hb_000102_020 Hb_000102_020 Hb_000656_170--Hb_000102_020 Hb_009051_030 Hb_009051_030 Hb_000656_170--Hb_009051_030 Hb_007441_040 Hb_007441_040 Hb_000656_170--Hb_007441_040 Hb_000479_190 Hb_000479_190 Hb_000656_170--Hb_000479_190 Hb_002226_070 Hb_002226_070 Hb_004032_010--Hb_002226_070 Hb_033834_040 Hb_033834_040 Hb_004032_010--Hb_033834_040 Hb_000690_180 Hb_000690_180 Hb_004032_010--Hb_000690_180 Hb_005045_060 Hb_005045_060 Hb_004032_010--Hb_005045_060 Hb_004032_010--Hb_003108_020 Hb_000002_380 Hb_000002_380 Hb_003108_020--Hb_000002_380 Hb_003502_090 Hb_003502_090 Hb_003108_020--Hb_003502_090 Hb_002182_080 Hb_002182_080 Hb_003108_020--Hb_002182_080 Hb_003108_020--Hb_000479_190 Hb_000102_020--Hb_007441_040 Hb_000102_020--Hb_009051_030 Hb_000261_140 Hb_000261_140 Hb_000102_020--Hb_000261_140 Hb_009182_010 Hb_009182_010 Hb_000102_020--Hb_009182_010 Hb_001214_160 Hb_001214_160 Hb_000102_020--Hb_001214_160 Hb_003787_010 Hb_003787_010 Hb_009051_030--Hb_003787_010 Hb_001057_040 Hb_001057_040 Hb_009051_030--Hb_001057_040 Hb_005784_110 Hb_005784_110 Hb_009051_030--Hb_005784_110 Hb_000574_480 Hb_000574_480 Hb_009051_030--Hb_000574_480 Hb_007441_040--Hb_009182_010 Hb_006541_010 Hb_006541_010 Hb_007441_040--Hb_006541_010 Hb_001814_050 Hb_001814_050 Hb_007441_040--Hb_001814_050 Hb_007012_060 Hb_007012_060 Hb_007441_040--Hb_007012_060 Hb_001584_190 Hb_001584_190 Hb_000479_190--Hb_001584_190 Hb_000985_060 Hb_000985_060 Hb_000479_190--Hb_000985_060 Hb_000479_190--Hb_003502_090 Hb_001205_150 Hb_001205_150 Hb_000479_190--Hb_001205_150 Hb_000363_360 Hb_000363_360 Hb_000479_190--Hb_000363_360
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
26.5971 17.5635 24.7329 39.9535 26.6723 53.5127
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
45.6913 80.1928 43.7643 27.3909 21.0568

CAGE analysis